Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 158 3e-33 seq423 150 4e-31 seq309 147 5e-30 seq38 145 2e-29 seq154 138 3e-27 seq31 113 1e-19 seq184 95.1 3e-14 seq28 95.1 3e-14 seq496 93.3 1e-13 seq29 93.3 1e-13 seq222 89.7 1e-12 seq647 86.0 1e-11 >seq6 Length=12818899 Score = 158 bits (174), Expect = 3e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || |||||||| || || |||||| Sbjct 2580505 ATACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2580446 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 2580445 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 2580386 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||| |||||||| || ||||| || | ||| || || || || Sbjct 2580385 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 2580326 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 |||||||| || || ||||||||||| | ||||| || || ||||||||| | ||| Sbjct 2580325 ACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATTGTCTGT 2580269 >seq423 Length=2413410 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| || ||||| | ||| | || ||||| Sbjct 7495 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 7436 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||| || || ||||||| ||||||||||| |||||||| ||| |||| Sbjct 7435 AGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCTGG 7376 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||| || ||||| | ||| ||||| || || || Sbjct 7375 ATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGTTTTC 7316 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || |||||||| ||| Sbjct 7315 CCTGTAAGGGTCTTCACGAAGATCTGCATCTTG 7283 >seq309 Length=1536079 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| || ||||| | ||| | || ||||| Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 714756 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| || || |||||||| ||||||||||| || ||||| |||||||| Sbjct 714755 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 714696 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || || || || || Sbjct 714695 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 714636 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || |||||||| Sbjct 714635 CCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 132 bits (146), Expect = 1e-25 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| || ||| | || | ||| ||||| Sbjct 713449 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAAA----GTACGACCATCTTCC 713394 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || ||||| || ||||||||||| || ||||| |||||||| Sbjct 713393 AGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 713334 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||| |||||||| || || ||||| ||||| || || || || || Sbjct 713333 ATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 713274 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || |||||||| Sbjct 713273 CCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq38 Length=12148825 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | |||||| | |||||||| | ||| | || ||||| Sbjct 10461016 ACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGTCCATCTTCC 10461075 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| || | |||||||| ||||||||||| |||||||| |||||||| Sbjct 10461076 AGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 10461135 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 |||| || ||||||||||||| || || |||||| ||||| || || || || || Sbjct 10461136 ATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTC 10461195 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || ||||| |||| ||| ||| Sbjct 10461196 CCCATAAGGGTCTTCACAAAAATCTTCATCTTG 10461228 >seq154 Length=6791889 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | |||||| | |||||||| | ||| | || ||||| Sbjct 1707847 ACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATCTTCC 1707788 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| || | |||||||| ||||||||||| ||||||| |||||||| Sbjct 1707787 AGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATCCTGG 1707728 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || | || || || Sbjct 1707727 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGTTTTC 1707668 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||||||||| Sbjct 1707667 CCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq31 Length=11202321 Score = 113 bits (124), Expect = 1e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || |||||||| || || | ||| || ||||| || || || ||| Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || ||||| || | ||| || || || || || || || || Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || || || || |||||||||||| Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| ||||| | || ||||| || || || || Sbjct 8039971 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCG 8040030 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || ||||||||||| ||||| || || Sbjct 8040031 GCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 8040090 Query 104483 AC 104484 || Sbjct 8040091 AC 8040092 >seq184 Length=3314118 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| |||| ||||| ||| |||| || ||| | ||||| || || || ||||| || Sbjct 1999463 TTCAGTCAGGAGGTGCAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCAGATTCTCATC 1999404 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || ||| |||||||||||||||||||| || ||||||||||||| || Sbjct 1999403 GAGAATGTTCATTCAGAGATGTACAGTTTACTAATAGATACTTACAT 1999357 >seq28 Length=9942386 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | || || |||||||| || ||||||||||| || || | || || Sbjct 239170 AGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTGCAGCCATC- 239228 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || | ||||| || ||||| || |||||||| | || ||||| || || Sbjct 239229 TCCAGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCCTTCCTTGTCT 239288 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||| || || ||||| | | ||| || || | || |||| |||| || ||| Sbjct 239289 TGGGTCTTGGCCTTGACATTCTTGATGGTGTCACTGAGCTCCACCTGGAGTG--ATGGTC 239346 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || | || || || || |||||||| ||| Sbjct 239347 TTGTCCGTCAAGGTCTTCACCAAGATCTGCATGTTG 239382 >seq496 Length=1373876 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| ||||| || |||||||| || || |||| |||| ||||| ||||||||||||| Sbjct 920019 CTTCAAGTTGCTTACCAGCAAAGATGAGTGTCTGCTGATGAGGAGCAATTCCTTCTTTAT 920078 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 |||| | || || ||||||| |||| ||||| | |||||||| || ||||| || Sbjct 920079 CCTGGACCTCAGCCTTTACATCTTCT-TAGTATCCCAGGGTTCTACTTCCAGTGTGAT 920135 >seq29 Length=12481696 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/178 (72%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 104355 GATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTT 104414 |||| | ||||| || || ||| || | |||||||| | ||| | || ||||| || | Sbjct 5526389 GATGCAGGGTAGACTCCTTTTGAGTACTGTAGTCAGACAAAGTGCAACA-TCTTCCAGCT 5526331 Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 | | |||||||| | | ||| | ||||||||||| || | ||| | |||||||| || Sbjct 5526330 GCTGGCCAGCAAAGAGCAACCTTAGCTGATCAGGAGGAATACATTCCTCATCCTGAACCT 5526271 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 | || ||||||||||||| || || ||||| |||| || | | |||||| || Sbjct 5526270 TGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCATTACAGTCTTCCC 5526213 >seq222 Length=3706221 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 |||||||||| |||||||| |||||||| ||||| || ||||||||||||| || || | Sbjct 1869557 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC-C 1869615 Query 104502 TAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||| |||| || || || || || || ||||| || || || |||||||| Sbjct 1869616 GAGGCTTCAACCTTGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCGTGAAAATCTGCATC 1869675 Query 104561 TTG 104563 ||| Sbjct 1869676 TTG 1869678 >seq647 Length=1633594 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| |||||||| | ||| | ||| ||||| || || || ||||| || || Sbjct 256747 TTTTGAATATTGTAGTCAGACAAAGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATC 256806 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 |||||||| ||||||||||| |||||| Sbjct 256807 AGCCTCTGCTGATCAGGAGGAATTCCT 256833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150942244379068