Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 158 3e-33
seq423 150 4e-31
seq309 147 5e-30
seq38 145 2e-29
seq154 138 3e-27
seq31 113 1e-19
seq184 95.1 3e-14
seq28 95.1 3e-14
seq496 93.3 1e-13
seq29 93.3 1e-13
seq222 89.7 1e-12
seq647 86.0 1e-11
>seq6
Length=12818899
Score = 158 bits (174), Expect = 3e-33
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || || || | || || |||||||| || || ||||||
Sbjct 2580505 ATACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2580446
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || || ||||| || |||||||| || |||||
Sbjct 2580445 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 2580386
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || ||||| ||||| |||||||| || ||||| || | ||| || || || ||
Sbjct 2580385 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 2580326
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566
|||||||| || || ||||||||||| | ||||| || || ||||||||| | |||
Sbjct 2580325 ACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATTGTCTGT 2580269
>seq423
Length=2413410
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || ||||| | ||| | || |||||
Sbjct 7495 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 7436
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || |||| || || ||||||| ||||||||||| |||||||| ||| ||||
Sbjct 7435 AGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCTGG 7376
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||| || ||||| | ||| ||||| || || ||
Sbjct 7375 ATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGTTTTC 7316
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| || || || || |||||||| |||
Sbjct 7315 CCTGTAAGGGTCTTCACGAAGATCTGCATCTTG 7283
>seq309
Length=1536079
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || ||||| | ||| | || |||||
Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 714756
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || ||||| || || |||||||| ||||||||||| || ||||| ||||||||
Sbjct 714755 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 714696
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| || || ||||| ||||| || || || || ||
Sbjct 714695 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 714636
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || ||||||||
Sbjct 714635 CCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 132 bits (146), Expect = 1e-25
Identities = 155/209 (74%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || ||| | || | ||| |||||
Sbjct 713449 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAAA----GTACGACCATCTTCC 713394
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || |||||||| || ||||| || ||||||||||| || ||||| ||||||||
Sbjct 713393 AGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 713334
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || |||| |||||||| || || ||||| ||||| || || || || ||
Sbjct 713333 ATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 713274
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || ||||||||
Sbjct 713273 CCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq38
Length=12148825
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || | |||||| | |||||||| | ||| | || |||||
Sbjct 10461016 ACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGTCCATCTTCC 10461075
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || ||||| || | |||||||| ||||||||||| |||||||| ||||||||
Sbjct 10461076 AGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 10461135
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
|||| || ||||||||||||| || || |||||| ||||| || || || || ||
Sbjct 10461136 ATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTC 10461195
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| |||| || || ||||| |||| ||| |||
Sbjct 10461196 CCCATAAGGGTCTTCACAAAAATCTTCATCTTG 10461228
>seq154
Length=6791889
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || | |||||| | |||||||| | ||| | || |||||
Sbjct 1707847 ACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATCTTCC 1707788
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || ||||| || | |||||||| ||||||||||| ||||||| ||||||||
Sbjct 1707787 AGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATCCTGG 1707728
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| || || ||||| ||||| || | || || ||
Sbjct 1707727 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGTTTTC 1707668
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || |||||||||||
Sbjct 1707667 CCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq31
Length=11202321
Score = 113 bits (124), Expect = 1e-19
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || || |||||||| || || | ||| || ||||| || || || |||
Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || || ||||| || | ||| || || || || || || || ||
Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| || || || || || || || ||||||||||||
Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || |||||||| ||||| | || ||||| || || || ||
Sbjct 8039971 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCG 8040030
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || ||||||||||| ||||| || ||
Sbjct 8040031 GCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 8040090
Query 104483 AC 104484
||
Sbjct 8040091 AC 8040092
>seq184
Length=3314118
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969
||| |||| ||||| ||| |||| || ||| | ||||| || || || ||||| ||
Sbjct 1999463 TTCAGTCAGGAGGTGCAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCAGATTCTCATC 1999404
Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|| ||| |||||||||||||||||||| || ||||||||||||| ||
Sbjct 1999403 GAGAATGTTCATTCAGAGATGTACAGTTTACTAATAGATACTTACAT 1999357
>seq28
Length=9942386
Score = 95.1 bits (104), Expect = 3e-14
Identities = 152/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| ||||| || | || || |||||||| || ||||||||||| || || | || ||
Sbjct 239170 AGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTGCAGCCATC- 239228
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || | ||||| || ||||| || |||||||| | || ||||| || ||
Sbjct 239229 TCCAGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCCTTCCTTGTCT 239288
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| |||| || || ||||| | | ||| || || | || |||| |||| || |||
Sbjct 239289 TGGGTCTTGGCCTTGACATTCTTGATGGTGTCACTGAGCTCCACCTGGAGTG--ATGGTC 239346
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| | || | || || || || |||||||| |||
Sbjct 239347 TTGTCCGTCAAGGTCTTCACCAAGATCTGCATGTTG 239382
>seq496
Length=1373876
Score = 93.3 bits (102), Expect = 1e-13
Identities = 92/118 (78%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465
|||| ||||| || |||||||| || || |||| |||| ||||| |||||||||||||
Sbjct 920019 CTTCAAGTTGCTTACCAGCAAAGATGAGTGTCTGCTGATGAGGAGCAATTCCTTCTTTAT 920078
Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523
|||| | || || ||||||| |||| ||||| | |||||||| || ||||| ||
Sbjct 920079 CCTGGACCTCAGCCTTTACATCTTCT-TAGTATCCCAGGGTTCTACTTCCAGTGTGAT 920135
>seq29
Length=12481696
Score = 93.3 bits (102), Expect = 1e-13
Identities = 128/178 (72%), Gaps = 1/178 (1%)
Strand=Plus/Minus
Query 104355 GATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTT 104414
|||| | ||||| || || ||| || | |||||||| | ||| | || ||||| || |
Sbjct 5526389 GATGCAGGGTAGACTCCTTTTGAGTACTGTAGTCAGACAAAGTGCAACA-TCTTCCAGCT 5526331
Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474
| | |||||||| | | ||| | ||||||||||| || | ||| | |||||||| ||
Sbjct 5526330 GCTGGCCAGCAAAGAGCAACCTTAGCTGATCAGGAGGAATACATTCCTCATCCTGAACCT 5526271
Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532
| || ||||||||||||| || || ||||| |||| || | | |||||| ||
Sbjct 5526270 TGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCATTACAGTCTTCCC 5526213
>seq222
Length=3706221
Score = 89.7 bits (98), Expect = 1e-12
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501
|||||||||| |||||||| |||||||| ||||| || ||||||||||||| || || |
Sbjct 1869557 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC-C 1869615
Query 104502 TAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| ||| |||| || || || || || || ||||| || || || ||||||||
Sbjct 1869616 GAGGCTTCAACCTTGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCGTGAAAATCTGCATC 1869675
Query 104561 TTG 104563
|||
Sbjct 1869676 TTG 1869678
>seq647
Length=1633594
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|| |||||||| |||||||| | ||| | ||| ||||| || || || ||||| || ||
Sbjct 256747 TTTTGAATATTGTAGTCAGACAAAGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATC 256806
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458
|||||||| ||||||||||| ||||||
Sbjct 256807 AGCCTCTGCTGATCAGGAGGAATTCCT 256833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150942244379068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |