Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq874 89.7 4e-13 >seq874 Length=605229 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| | || || ||||| ||||| ||||| | ||| || ||||| |||||| Sbjct 546992 GGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGATGCCCCAGGCA 546933 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGAC 127289 || || || || || || || || || || | |||| |||||| || ||||||||||| Sbjct 546932 GAGAACCATGGCCCAGAAATCAAGGAGCATTTGAATTTCCTGGGAGAGAAGCTGAAGAC 546874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429892334133752