Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq457 109 4e-19
>seq457
Length=2943904
Score = 109 bits (120), Expect = 4e-19
Identities = 127/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
|||||| |||| |||||||| |||| ||||||||||| ||||| || || || |||||
Sbjct 1194023 CATGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTC 1194082
Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|| || | || |||| | || ||| | |||| ||| |||| ||| |||||||| |
Sbjct 1194083 CCCTTCCTGCC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 1194141
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
||||||| | || ||||| ||| || ||||| | |||||||||||
Sbjct 1194142 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCC 1194190
Score = 93.3 bits (102), Expect = 3e-14
Identities = 112/151 (74%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || |||||||||||||||||||| || || | ||||||
Sbjct 1188183 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCCATG 1188242
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | || |||| |||||| ||||| || || ||||| | | ||| || ||||||||
Sbjct 1188243 T-CTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACA 1188301
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656
| || | ||| ||||| || || || |||
Sbjct 1188302 GAGGGCATGGCAGGGAGGCAGTGCCATCAGG 1188332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340009419251733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |