Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq457 109 4e-19 >seq457 Length=2943904 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| |||| ||||||||||| ||||| || || || ||||| Sbjct 1194023 CATGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCGTAAACGGGGCCCAGGTC 1194082 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | || |||| | || ||| | |||| ||| |||| ||| |||||||| | Sbjct 1194083 CCCTTCCTGCC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 1194141 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| | || ||||| ||| || ||||| | ||||||||||| Sbjct 1194142 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGACCC 1194190 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||||||||| || || | |||||| Sbjct 1188183 GCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCCATG 1188242 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || |||| |||||| ||||| || || ||||| | | ||| || |||||||| Sbjct 1188243 T-CTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACA 1188301 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 1188302 GAGGGCATGGCAGGGAGGCAGTGCCATCAGG 1188332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340009419251733