Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq874 107 2e-18
>seq874
Length=605229
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| | || |||||||||||||||||||||| ||||| |
Sbjct 547003 AGGGTTACCTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 546944
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| ||||| || || || | ||| | ||| ||||| |||| | ||||| ||||
Sbjct 546943 TGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAATTTCCTGGGAGAGA 546884
Query 10260 ATCTAAAGACCCTAAGG 10276
| || |||||||| |||
Sbjct 546883 AGCTGAAGACCCTCAGG 546867
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || || || |||||||| ||||||||||| |||||||| || || |||| |
Sbjct 544720 AGCTCCAAGAGAACGGCGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTGCA 544661
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||||| ||||||||||| | |||
Sbjct 544660 TAGAAGCGTACATGACCATCAGAAT 544636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547167631096960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |