Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq874 107 2e-18 >seq874 Length=605229 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| | || |||||||||||||||||||||| ||||| | Sbjct 547003 AGGGTTACCTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 546944 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || || || | ||| | ||| ||||| |||| | ||||| |||| Sbjct 546943 TGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAATTTCCTGGGAGAGA 546884 Query 10260 ATCTAAAGACCCTAAGG 10276 | || |||||||| ||| Sbjct 546883 AGCTGAAGACCCTCAGG 546867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || || || |||||||| ||||||||||| |||||||| || || |||| | Sbjct 544720 AGCTCCAAGAGAACGGCGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTGCA 544661 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| ||||||||||| | ||| Sbjct 544660 TAGAAGCGTACATGACCATCAGAAT 544636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167631096960