Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq131 147 3e-30 seq872 100 4e-16 >seq131 Length=6132816 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || |||||| || ||||| || | ||| | |||| |||| Sbjct 4275346 AAGGGACAGCCCTTCACATTATTACAGATGAGTGACTGAATGGAAGCAGTGTTGATGATC 4275405 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 4275406 TTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 4275465 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 4275466 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 4275525 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| | ||||| ||||||||||||| | | | |||| ||||| || |||||| Sbjct 4275526 ATGGCATCCGGACGCGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 4275585 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || || || |||||||| ||||||| Sbjct 4275586 TCACTGTAGAGGGCTTCCAACTCCGCGGCCATTTCCTTCTCTCCTG 4275631 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| || ||||| || |||||||| |||||||||||||||||||| |||| |||||||| Sbjct 4276943 CCACTCAGGATGCTCCCGTTTCAGCACATCGCACACTCTGTTGTGCTCCCGAAGCCAGAT 4277002 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 ||||| |||||||| |||||||| ||||| ||||| |||| || || ||||| | || Sbjct 4277003 CGTAGCATACATCATCAGACCAGGTACCAGACCAAAGACCTCCTGGCCCACAGCAAACCG 4277062 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 || | || || | || || |||||||| | ||||| |||||||| | || Sbjct 4277063 CAGGTGCTCAGGGGTGTGAGGGGGGTAGATCATTTCCACCTCAGTGTCTTTGACTGTAGG 4277122 Query 9837 GGGATACATTTCACCGTCAAT 9857 || |||| || || ||||| Sbjct 4277123 AGGGTACACCTCGCCATCAAT 4277143 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | || Sbjct 4278309 TCTTACCCCATGGCCCAGTCCTCGGGTGAATCCAGGTCCTCGTTTCTGATCTGTCTTGAA 4278368 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || |||||||| ||| |||| || |||||||| | || ||||| ||||| || Sbjct 4278369 AAACTGATGAGTGAAATGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGGTC 4278428 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || ||||| | |||| || ||| |||||||| ||| Sbjct 4278429 AGGGATGAAGTTTCTCCTTAGGAGAACTTTTTCCAGAAC 4278467 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | || || ||||| || || | | Sbjct 4279053 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACTGGAGGAAGGGCTCTGGTG 4279112 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| || |||||| || ||| | |||| | | ||||| | Sbjct 4279113 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 4279172 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 || || ||||||||||||| ||||| Sbjct 4279173 GGTGGACTGTCAATCAAATGTGATCT 4279198 >seq872 Length=978185 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || |||||||| ||||| || | || || || ||| || Sbjct 45748 AAACCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTT 45807 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | || ||||| || |||||| Sbjct 45808 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 45867 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| | |||||||| | | || | ||| ||||| | ||| |||||||| Sbjct 45868 GAGTTGGGCTGACACTTTTCCAGAAGTAGCCCCGGGTAGAACTCTAAAGCATCGATGTCA 45927 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || | | | || || || || ||||| ||||||| Sbjct 45928 CCATATAACTCTTCCAACTCAGCGGCCATCTCCTTCTCTCCTG 45970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708250946308240