Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 3e-21
seq70 114 1e-20
seq309 96.9 3e-15
seq366 91.5 1e-13
seq423 84.2 2e-11
seq31 84.2 2e-11
seq3 82.4 7e-11
>seq6
Length=12818899
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||||| ||| || || || || | ||| || || || ||| | ||| |||
Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || ||||||| | || ||||| || || || ||||| |||||||| |
Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| ||||||||||| ||| |||||| | | ||||| || | |||||||| ||
Sbjct 2580364 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTA 2580305
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | |||||||| |||||||||||
Sbjct 2580304 CCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276
>seq70
Length=7483708
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| |||||| || || || || || | ||| ||||| || ||| | |
Sbjct 5585704 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGA 5585763
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|||||||||||||| || |||| || | | ||||| ||||| || || |||| |||
Sbjct 5585764 TCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTG 5585823
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| | | |||||| | ||||| |||| ||||||
Sbjct 5585824 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || || || ||||||||||||||||||
Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 5585919
>seq309
Length=1536079
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | ||||||||||| |||||||||||||| ||
Sbjct 713400 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTT 713341
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| | | | ||||| | | | || || || | ||||||
Sbjct 713340 ATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGAT 713281
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || || || || ||||| || ||||||||
Sbjct 713280 GGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | || || |||||||| | || || || || ||| |
Sbjct 714822 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCC 714763
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || | ||||| | || |||||||| |||||||||||||| ||
Sbjct 714762 ATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTT 714703
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | ||||| | | | || || || | ||||||
Sbjct 714702 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGAT 714643
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || || || || ||||| || ||||||||
Sbjct 714642 GGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
>seq366
Length=4409749
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| |||||| || | || || || | ||| || || || |||| | |
Sbjct 1116219 CGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCA 1116278
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| |||||| |||| || | || ||||| ||||| || || ||||| ||
Sbjct 1116279 TCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTA 1116338
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| | | |||||| | | ||||| |||| ||||||
Sbjct 1116339 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1116398
Query 94973 GTTTT 94977
|| ||
Sbjct 1116399 GTCTT 1116403
>seq423
Length=2413410
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | || || |||||||| | || || || || ||| |
Sbjct 7502 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCC 7443
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||| || |||||||| |||||||| ||||| ||
Sbjct 7442 ATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 7383
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
| | || || ||||| || | | ||||| | | | || | |||| |||||
Sbjct 7382 AGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGAT 7323
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || ||||| || ||||| |||||||||||
Sbjct 7322 GGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287
>seq31
Length=11202321
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || ||||| || || || || || |||||
Sbjct 8040985 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTT 8041044
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || |||||||| ||| |||||| | | || || || | |||||
Sbjct 8041045 ATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGAT 8041104
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || || ||||| |||||||||||
Sbjct 8041105 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140
>seq3
Length=5748141
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/217 (69%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| ||||| || || || || || | ||| || || || ||| | |
Sbjct 3927308 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA 3927367
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAG-ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|| ||||||| || | | |||| || | || ||||| ||||| || || ||||| ||
Sbjct 3927368 TCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTT 3927427
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||||| ||| |||||| | ||||| || | |||||
Sbjct 3927428 ATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGAT 3927487
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| | || || || || || ||||||||||||||||||
Sbjct 3927488 GTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 3927524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448117929847560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |