Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq184 95.1 1e-14
>seq184
Length=3314118
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| | ||| | | | |
Sbjct 1986822 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATGACTGCAAAGC 1986881
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || ||
Sbjct 1986882 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTT 1986941
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 1986942 CCATAAAATCAAAGGGATTTTC 1986963
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
|||||||| || || | ||||| ||||| || | |||||||| | |||||||| ||
Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| | ||||||| || || ||||||||||| || ||||| || || ||
Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGCC 1994197
Query 21620 AC 21621
||
Sbjct 1994198 AC 1994199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531695213692040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |