Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 273 3e-68
seq498 248 1e-60
seq657 131 2e-25
seq184 105 8e-18
seq78 95.1 2e-14
>seq1345
Length=786133
Score = 273 bits (302), Expect = 3e-68
Identities = 584/871 (67%), Gaps = 31/871 (4%)
Strand=Plus/Minus
Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074
|||||| || ||||| | || || || || || || |||| ||| | ||| ||||||||
Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146
Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134
|||||| ||||| | ||| || || |||| || ||||| |||| || ||||
Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086
Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194
|| ||| | || ||||| || || ||||||| | | ||||| || ||||| ||
Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026
Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254
|| || | ||| | || || || || || || || | |||| | || ||
Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966
Query 33255 TCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313
|| || | | || | | | | | || | | || || ||||||| || || || |
Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907
Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373
| || || | ||||| ||||| || || || || |||||||| || || |||||||| |
Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847
Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433
| || ||||| || ||||| ||||| || || || || |||||||||||||| ||||| |
Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787
Query 33434 CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAG 33493
| || |||||||| | || | ||||||| ||||| || | ||||
Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCTTTGTC 220741
Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553
|||| | || || ||||||||| |||| || ||||| |||||||| |
Sbjct 220740 CCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692
Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613
| || || ||||||| | || || || | ||||| |||||||| ||||| || |
Sbjct 220691 TCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636
Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673
|||| ||| | || || || || |||||||| | |||| || | || |||||| |
Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576
Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733
||| ||| | |||| || ||||| ||||| | |||||| |||||||| || ||| |
Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516
Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 33793
|||| ||||| || | | || ||| | || | ||| | | ||||| || |
Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGG 220456
Query 33794 ATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGA 33853
| | || || || || | |||||||| || ||||| | || || ||||| | |||||
Sbjct 220455 AAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGA 220396
Query 33854 TGTCATAATATTGGATTGGGAAAATAACAAA 33884
| |||| |||| ||| || || || |||||
Sbjct 220395 TATCATGGTATTTGATGGGAAAGATGACAAA 220365
>seq498
Length=2542268
Score = 248 bits (274), Expect = 1e-60
Identities = 410/591 (69%), Gaps = 27/591 (5%)
Strand=Plus/Plus
Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348
|| || ||||||| || || || || ||||| | ||||||||||| || || || ||
Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679
Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408
|||||||| || || |||||||| || || |||| || ||||| ||||| || | |||
Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739
Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33465
|| || |||||||| ||||| || || |||||||| | || | |||| || |
Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796
Query 33466 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525
| | |||| ||||| ||||| ||||||||||| || ||| ||||||||
Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856
Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585
|||||||| ||| | |||||||| | | || ||| |||||||| || || || ||
Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916
Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645
| ||||| |||||||| ||||| |||||||| ||||| || || || || ||||||||
Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976
Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705
| ||||| || | || |||||| | |||||| | |||| || ||||| |||||
Sbjct 2186977 CGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCG---CTCCAAGTTCTCATTGACTATG 2187033
Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765
| |||||| ||||| || || || || || |||||||| | | || | ||| |
Sbjct 2187034 CTGTCACTCGCTGCGAAGAAAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGGTTTC 2187092
Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825
|| ||| | | ||||||||| || | || ||||| ||
Sbjct 2187093 AGAGCTCCCCAGTGCTGGATATCTTTGGA----------------AAGGTTCAAAAGGAG 2187136
Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA 33876
||||| || || || ||||||| |||||| |||| |||| || |||||||
Sbjct 2187137 GCCTCCGCTTTCTTGTACATGTGCCAGATATCATGGTATTTGA-TGGGAAA 2187186
>seq657
Length=1571634
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| |
Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 954536 CTGTTTCTTACACCATA 954520
Score = 105 bits (116), Expect = 8e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| |
Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | ||| || |||||||||||||| || || || || || ||||| || | | ||||
Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| || | |||||||| | || ||||| | | |||| | || || ||||
Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| |||||||| ||||||||||| || | || ||||| | || ||
Sbjct 947915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 947856
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || || ||||||||||| || | || |||||| | | || || | |||||
Sbjct 947855 CTGCTCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 947796
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364
|| |||| ||| || || | ||||||| ||
Sbjct 947795 AGGCTCCAGGTAAATAGCAAATGCTCCAGGGCG 947763
>seq184
Length=3314118
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| || || || || || || || ||||| |||||||||||||| ||||| | ||| |
Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| | ||| ||||| ||||| ||||| || ||||| || || || ||||
Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195
Query 33446 CAATAAGTCTCTCTCC 33461
| | | |||||| ||
Sbjct 1994196 CCACCACTCTCTCCCC 1994211
>seq78
Length=6419775
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/145 (75%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTC 33007
|||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || |
Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619
Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067
|||| | |||||||| ||||| || || || || || || || |||||||| | ||| |
Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679
Query 33068 TATTTTCCATGAAATCAAACGGATT 33092
||||||||||||| ||||| |||||
Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622706423120360
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