Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1345 273 3e-68 seq498 248 1e-60 seq657 131 2e-25 seq184 105 8e-18 seq78 95.1 2e-14 >seq1345 Length=786133 Score = 273 bits (302), Expect = 3e-68 Identities = 584/871 (67%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 |||||| || ||||| | || || || || || || |||| ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||| ||||| | ||| || || |||| || ||||| |||| || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 || ||| | || ||||| || || ||||||| | | ||||| || ||||| || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || | ||| | || || || || || || || | |||| | || || Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 33255 TCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313 || || | | || | | | | | || | | || || ||||||| || || || | Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | || || | ||||| ||||| || || || || |||||||| || || |||||||| | Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || ||||| || ||||| ||||| || || || || |||||||||||||| ||||| | Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787 Query 33434 CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAG 33493 | || |||||||| | || | ||||||| ||||| || | |||| Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCTTTGTC 220741 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| | || || ||||||||| |||| || ||||| |||||||| | Sbjct 220740 CCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | || || ||||||| | || || || | ||||| |||||||| ||||| || | Sbjct 220691 TCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 |||| ||| | || || || || |||||||| | |||| || | || |||||| | Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||| ||| | |||| || ||||| ||||| | |||||| |||||||| || ||| | Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 33793 |||| ||||| || | | || ||| | || | ||| | | ||||| || | Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGG 220456 Query 33794 ATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGA 33853 | | || || || || | |||||||| || ||||| | || || ||||| | ||||| Sbjct 220455 AAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGA 220396 Query 33854 TGTCATAATATTGGATTGGGAAAATAACAAA 33884 | |||| |||| ||| || || || ||||| Sbjct 220395 TATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 248 bits (274), Expect = 1e-60 Identities = 410/591 (69%), Gaps = 27/591 (5%) Strand=Plus/Plus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || ||||||| || || || || ||||| | ||||||||||| || || || || Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 |||||||| || || |||||||| || || |||| || ||||| ||||| || | ||| Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33465 || || |||||||| ||||| || || |||||||| | || | |||| || | Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796 Query 33466 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 | | |||| ||||| ||||| ||||||||||| || ||| |||||||| Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856 Query 33526 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 |||||||| ||| | |||||||| | | || ||| |||||||| || || || || Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 | ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976 Query 33646 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 | ||||| || | || |||||| | |||||| | |||| || ||||| ||||| Sbjct 2186977 CGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCG---CTCCAAGTTCTCATTGACTATG 2187033 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765 | |||||| ||||| || || || || || |||||||| | | || | ||| | Sbjct 2187034 CTGTCACTCGCTGCGAAGAAAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGGTTTC 2187092 Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 || ||| | | ||||||||| || | || ||||| || Sbjct 2187093 AGAGCTCCCCAGTGCTGGATATCTTTGGA----------------AAGGTTCAAAAGGAG 2187136 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA 33876 ||||| || || || ||||||| |||||| |||| |||| || ||||||| Sbjct 2187137 GCCTCCGCTTTCTTGTACATGTGCCAGATATCATGGTATTTGA-TGGGAAA 2187186 >seq657 Length=1571634 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 954536 CTGTTTCTTACACCATA 954520 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 947915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 947856 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||||||||| || | || |||||| | | || || | ||||| Sbjct 947855 CTGCTCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 947796 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || |||| ||| || || | ||||||| || Sbjct 947795 AGGCTCCAGGTAAATAGCAAATGCTCCAGGGCG 947763 >seq184 Length=3314118 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || || || || ||||| |||||||||||||| ||||| | ||| | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| | ||| ||||| ||||| ||||| || ||||| || || || |||| Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 1994196 CCACCACTCTCTCCCC 1994211 >seq78 Length=6419775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTC 33007 |||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 |||| | |||||||| ||||| || || || || || || || |||||||| | ||| | Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 ||||||||||||| ||||| ||||| Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622706423120360