Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 91.5 4e-13
seq657 87.8 5e-12
>seq1345
Length=786133
Score = 91.5 bits (100), Expect = 4e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
||| || || | || ||||| | || |||||||| ||||||||||| | ||| ||
Sbjct 220762 GAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCA 220821
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || || || | | ||||||| || || || ||||| |||||| | ||
Sbjct 220822 ATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAATGAGCTTATC 220881
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643
||| |||||||||| | ||| || ||||| ||
Sbjct 220882 AGCAGAGATGAGGGCTTACATTGTGACTTTGCCTG 220916
>seq657
Length=1571634
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| ||||| || || || || |||
Sbjct 949911 GCTCAGCAGCTTTGGTATGCCATCATTGAATCTCAGACAGAGACGGGCACCCCATACATG 949970
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| ||||||||| |||| || || || |
Sbjct 949971 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAAAACCTGGGAACCATCAAATGC 950030
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | || || |||
Sbjct 950031 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 950063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302837243480222
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |