Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq309 89.7 5e-13 seq657 86.0 6e-12 seq31 82.4 7e-11 >seq6 Length=12818899 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || |||||||| || || |||||| || || |||||||||||| Sbjct 2580472 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 2580413 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | | ||||||||| || ||||| || |||||||| ||| || |||| Sbjct 2580412 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGGATCTTTGCCTTG 2580353 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || ||| ||||| || | ||| | ||| ||||| |||| ||| Sbjct 2580352 ACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTACCAGTTAAGGTT 2580293 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 2580292 TTCACGAAGATCTGCAT 2580276 >seq309 Length=1536079 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | ||| |||||||||||||| ||||| || | Sbjct 714833 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGAC 714774 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || ||| |||| | | |||||| || ||||| Sbjct 714773 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 714714 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | || || | || || | Sbjct 714713 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACC 714654 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | |||||| || || || || || |||||||||||||| Sbjct 714653 TCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 >seq657 Length=1571634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | ||||| ||||| ||||||||||||||||| |||||||| || || || Sbjct 950054 TACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTGCTCTT 949995 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || || || | || |||||||||||||| || ||| ||||| Sbjct 949994 CCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 949950 >seq31 Length=11202321 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | ||||||||||| || ||||| || ||||| Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || ||||| |||||||| Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471830361152640