Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq31 82.4 6e-11 >seq6 Length=12818899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | || ||| | | || Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||||||||||| Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| || | |||||||| Sbjct 2580367 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGG 2580310 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || | ||||| || || ||||||||| Sbjct 2580309 TCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq31 Length=11202321 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840 || |||| || ||||| ||| | || || ||||| ||||| || | ||||||||| Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 16841 TC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGA 16898 || || || || ||| || | | | ||||| | ||||||| ||||| ||||| Sbjct 8041046 TCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGA 8041103 Query 16899 TGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || |||||||| || || || || |||||||||||| Sbjct 8041104 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404935342713790