Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 1e-14
seq31 82.4 6e-11
>seq6
Length=12818899
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || ||||||||||| | || ||| | | ||
Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || ||||| ||| | || |||| ||| ||||| || | |||||||||||
Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| ||||| ||| || | | | ||||| | |||||| || | ||||||||
Sbjct 2580367 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGG 2580310
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
| || || || | ||||| || || |||||||||
Sbjct 2580309 TCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq31
Length=11202321
Score = 82.4 bits (90), Expect = 6e-11
Identities = 116/161 (72%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840
|| |||| || ||||| ||| | || || ||||| ||||| || | |||||||||
Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045
Query 16841 TC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGA 16898
|| || || || ||| || | | | ||||| | ||||||| ||||| |||||
Sbjct 8041046 TCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGA 8041103
Query 16899 TGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| || |||||||| || || || || ||||||||||||
Sbjct 8041104 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404935342713790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |