Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq500 140 2e-28 seq640 127 1e-24 seq12257 122 6e-23 seq1496 122 6e-23 seq1092 104 2e-17 seq6 98.7 7e-16 seq309 96.9 2e-15 seq157 95.1 8e-15 seq423 84.2 1e-11 seq194 82.4 5e-11 >seq500 Length=997981 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 810521 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 810462 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 810461 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 810427 >seq640 Length=383956 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 80846 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 80787 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 80786 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 80752 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 76122 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 76063 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 76062 GCCGGTATTTAGCCTTA 76046 >seq12257 Length=17741 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 11708 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 11649 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 11648 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 11614 >seq1496 Length=156218 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 16047 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 15988 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 15987 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 15953 >seq1092 Length=135615 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 134531 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 134472 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 134471 GCCAATATTTAGCTTTA 134455 >seq6 Length=12818899 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||| | |||| || |||||| ||| || || || ||||| |||| Sbjct 2580504 TACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 2580445 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || || || | || Sbjct 2580444 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGG 2580385 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||||||| || ||| ||| ||||||| || || || | || | Sbjct 2580384 GGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 2580325 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||| || || || ||||| || |||||||||||||| |||||||| Sbjct 2580324 CCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq309 Length=1536079 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||||||||| ||||||||| ||| | || Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || || || || || | || ||||| | || | ||||| || || Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || || |||||| || | || || || Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| |||||||| |||||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||||||||| | |||| ||| | || Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATT----CAAAGTACGACCATC 713398 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| | ||| | | || || |||||| || | || || || Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| |||||||| |||||||| Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq157 Length=5074762 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| | Sbjct 1049133 CTCTCTCTTCAAACTTCTTTTCAACTTTCCCTCACAGTACTTGTTGACTATCGGTCTTGT 1049074 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1049073 GCCGGTATTTAGCCTTA 1049057 >seq423 Length=2413410 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||||||||| ||||||||| ||| | || Sbjct 7499 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 7440 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || | || || | | || ||||| | || | ||||| || | Sbjct 7439 TTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGC 7380 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || ||| ||||| || | ||| || || Sbjct 7379 CTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGT 7320 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || | ||| |||||||| |||||||| || Sbjct 7319 TTTCCCTGTAAGGGTCTTCACGAAGATCTGCATCTT 7284 >seq194 Length=1962380 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||| |||| || | |||||||| |||||||||||| Sbjct 673320 CTCTCTCTTCAAAGTTCTTTTCAATTTTCTCTTA--TTACTTGTTGACTATCGGTCTCGT 673377 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 673378 GCTGGTATTTAGCCTTA 673394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334820975252351