Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq498 210 2e-49 seq1345 203 4e-47 seq78 96.9 4e-15 >seq498 Length=2542268 Score = 210 bits (232), Expect = 2e-49 Identities = 522/785 (66%), Gaps = 33/785 (4%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || |||||||| ||||| | || ||||| || | || Sbjct 2186467 CTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCTTC 2186526 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG-ATTTC 93042 ||||| | || || || | ||| | | ||| || || || | | ||| ||||| Sbjct 2186527 ACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGT-TGACAATTATTTC 2186585 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | |||| || | | ||| || ||||| | | ||| |||| | ||| |||||||| Sbjct 2186586 TTTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 2186645 Query 93103 GGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 ||||| || ||||||| || | || | ||||||| ||||| | || || | || Sbjct 2186646 ACAGTGTAAGCCCTCGTCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCA 2186704 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 |||| | ||||||||||| |||||||| | ||| ||| || || || ||||||| Sbjct 2186705 GTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTCCA 2186761 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 |||| ||||| || |||| |||||| | | || || | ||||| | Sbjct 2186762 CGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACGCA 2186821 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341 | ||||| ||||| || ||||| | | |||| | ||||| ||||| | || || || | Sbjct 2186822 AGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATACT 2186881 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401 | | ||| | |||||| ||||| || || || | ||| |||||||||||||| | Sbjct 2186882 CCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATGTA 2186941 Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461 || ||||| ||||||||||| || |||||||| | || || |||| || ||||||| Sbjct 2186942 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTT 2187001 Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | ||||| ||| | | || ||||||||||| | || ||||| || ||||| Sbjct 2187002 GGCTAAATCGCTCCAAG---TTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCAC 2187058 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTA-AGCTTATCCCAAT--CGGATAGAT 93578 | || |||||||||| |||| | || | |||| |||| | |||| || Sbjct 2187059 GAACGTGAGGTATAAAATGTCTCTCCTGGGTTTCAGAGCT--CCCCAGTGCTGGAT--AT 2187114 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| ||||| || ||||| || || || ||||| |||||||| | Sbjct 2187115 CTTTGGAAAG----------------GTTCAAAAGGAGGCCTCCGCTTTCTTGTACATGT 2187158 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| || || || |||| || ||||| |||| || || | ||||| ||| | |||| Sbjct 2187159 GCCAGATATCATGGTATTTGATGGGAAACATGATGAAGCGCTGGGGGTTTTCTCTCAGTA 2187218 Query 93699 ACGGC 93703 | ||| Sbjct 2187219 ATGGC 2187223 >seq1345 Length=786133 Score = 203 bits (224), Expect = 4e-47 Identities = 505/762 (66%), Gaps = 36/762 (5%) Strand=Plus/Minus Query 92933 ACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGA 92992 |||||||| |||||||| ||||| || | ||||| || | ||| ||||| | Sbjct 221075 ACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTTCACAGGCAAG 221016 Query 92993 GCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTA 93052 || || || | ||| || | ||| || | ||| | | | |||| ||||||| Sbjct 221015 GCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTTACTTACTCTC 220956 Query 93053 CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAA 93112 | ||| || ||||| | | ||| |||| | ||| |||||||| |||||| Sbjct 220955 TGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAG 220896 Query 93113 CCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171 || || |||| || | || | ||||||| ||||| | || || | ||||| || || Sbjct 220895 CCCTCATCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTT 220837 Query 93172 CTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAA 93231 ||| ||||| |||||||| |||||| ||||||||| || || ||||||||||| ||||| Sbjct 220836 CTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 220777 Query 93232 TGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATC 93291 ||||||| || ||| || | | || || || | |||| | Sbjct 220776 GGCCACAACACATTCTCCATATGTAGCC--------------CCTTTGTC---CCCAGT- 220735 Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTC 93351 || || ||||| | |||| ||||| || || || || || | ||| | Sbjct 220734 -GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTT 220685 Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411 |||||| || |||| || || | ||| |||||||||||||| | ||| || || Sbjct 220684 GGAATCTT-TA---ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTAT 220629 Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471 |||||||||| || |||||||| | | || |||| || |||||||| ||| Sbjct 220628 GCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAG 220569 Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531 | || | || ||||||||||| | || ||||||||| |||||| | ||| Sbjct 220568 TTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGG 220509 Query 93532 TATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGAT 93590 ||||| |||| ||||| ||| || ||||| | | || | ||| || ||||| | Sbjct 220508 TATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGA-ATATCCTTGGAAAGGT 220450 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTT 93650 | || || || | |||||||| || || || |||| |||||||| | ||| || || | Sbjct 220449 CCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCAT 220390 Query 93651 GATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692 | |||| || ||||| |||||||| | | ||||| |||| Sbjct 220389 GGTATTTGATGGGAAAGATGACAAAGCAGTGGGGGTTTTCTT 220348 >seq78 Length=6419775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 93116 TCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||||| || | || | ||||||| ||||| | || || | |||||| || ||||| Sbjct 5585563 TCGTCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTT 5585621 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 |||||| ||||| || || ||| |||||| || || || ||||||||||| || || || Sbjct 5585622 GAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGC 5585681 Query 93235 CACAATACGTTC 93246 ||||| |||||| Sbjct 5585682 CACAACACGTTC 5585693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 |||| ||| || || ||| | |||||||| || || || ||||| |||||||| | ||| Sbjct 5588651 TGAATGATT-ACCTCCTCGGCCGTCCAAAAGGAGGCCTCCGCTTTCTTGTACATCTGCCA 5588709 Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGG 93702 ||||| || |||| || ||||| ||||| || || | ||||| ||| | |||||||| Sbjct 5588710 GATGTCATGGTATTTGATGGGAAAGATGACGAATCGGTGGGGGTTTTCTCTCAGTAACGG 5588769 Query 93703 CTC 93705 ||| Sbjct 5588770 CTC 5588772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556645566340040