Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq498 210 2e-49
seq1345 203 4e-47
seq78 96.9 4e-15
>seq498
Length=2542268
Score = 210 bits (232), Expect = 2e-49
Identities = 522/785 (66%), Gaps = 33/785 (4%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
|| || || ||||| || |||||||| ||||| | || ||||| || | ||
Sbjct 2186467 CTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCTTC 2186526
Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG-ATTTC 93042
||||| | || || || | ||| | | ||| || || || | | ||| |||||
Sbjct 2186527 ACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGT-TGACAATTATTTC 2186585
Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102
| |||| || | | ||| || ||||| | | ||| |||| | ||| ||||||||
Sbjct 2186586 TTTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTC 2186645
Query 93103 GGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
||||| || ||||||| || | || | ||||||| ||||| | || || | ||
Sbjct 2186646 ACAGTGTAAGCCCTCGTCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCA 2186704
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
|||| | ||||||||||| |||||||| | ||| ||| || || || |||||||
Sbjct 2186705 GTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTTCCA 2186761
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281
|||| ||||| || |||| |||||| | | || || | ||||| |
Sbjct 2186762 CGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACGCA 2186821
Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341
| ||||| ||||| || ||||| | | |||| | ||||| ||||| | || || || |
Sbjct 2186822 AGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATACT 2186881
Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401
| | ||| | |||||| ||||| || || || | ||| |||||||||||||| |
Sbjct 2186882 CCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATGTA 2186941
Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461
|| ||||| ||||||||||| || |||||||| | || || |||| || |||||||
Sbjct 2186942 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTT 2187001
Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521
| ||||| ||| | | || ||||||||||| | || ||||| || |||||
Sbjct 2187002 GGCTAAATCGCTCCAAG---TTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCAC 2187058
Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTA-AGCTTATCCCAAT--CGGATAGAT 93578
| || |||||||||| |||| | || | |||| |||| | |||| ||
Sbjct 2187059 GAACGTGAGGTATAAAATGTCTCTCCTGGGTTTCAGAGCT--CCCCAGTGCTGGAT--AT 2187114
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638
|||| ||||| || ||||| || || || ||||| |||||||| |
Sbjct 2187115 CTTTGGAAAG----------------GTTCAAAAGGAGGCCTCCGCTTTCTTGTACATGT 2187158
Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698
||| || || || |||| || ||||| |||| || || | ||||| ||| | ||||
Sbjct 2187159 GCCAGATATCATGGTATTTGATGGGAAACATGATGAAGCGCTGGGGGTTTTCTCTCAGTA 2187218
Query 93699 ACGGC 93703
| |||
Sbjct 2187219 ATGGC 2187223
>seq1345
Length=786133
Score = 203 bits (224), Expect = 4e-47
Identities = 505/762 (66%), Gaps = 36/762 (5%)
Strand=Plus/Minus
Query 92933 ACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGA 92992
|||||||| |||||||| ||||| || | ||||| || | ||| ||||| |
Sbjct 221075 ACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTTCACAGGCAAG 221016
Query 92993 GCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTA 93052
|| || || | ||| || | ||| || | ||| | | | |||| |||||||
Sbjct 221015 GCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTTACTTACTCTC 220956
Query 93053 CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAA 93112
| ||| || ||||| | | ||| |||| | ||| |||||||| ||||||
Sbjct 220955 TGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAG 220896
Query 93113 CCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTT 93171
|| || |||| || | || | ||||||| ||||| | || || | ||||| || ||
Sbjct 220895 CCCTCATCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTT 220837
Query 93172 CTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAA 93231
||| ||||| |||||||| |||||| ||||||||| || || ||||||||||| |||||
Sbjct 220836 CTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 220777
Query 93232 TGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATC 93291
||||||| || ||| || | | || || || | |||| |
Sbjct 220776 GGCCACAACACATTCTCCATATGTAGCC--------------CCTTTGTC---CCCAGT- 220735
Query 93292 GGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTC 93351
|| || ||||| | |||| ||||| || || || || || | ||| |
Sbjct 220734 -GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTT 220685
Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411
|||||| || |||| || || | ||| |||||||||||||| | ||| || ||
Sbjct 220684 GGAATCTT-TA---ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTAT 220629
Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471
|||||||||| || |||||||| | | || |||| || |||||||| |||
Sbjct 220628 GCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAG 220569
Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531
| || | || ||||||||||| | || ||||||||| |||||| | |||
Sbjct 220568 TTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGG 220509
Query 93532 TATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGAT 93590
||||| |||| ||||| ||| || ||||| | | || | ||| || ||||| |
Sbjct 220508 TATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGA-ATATCCTTGGAAAGGT 220450
Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTT 93650
| || || || | |||||||| || || || |||| |||||||| | ||| || || |
Sbjct 220449 CCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCAT 220390
Query 93651 GATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT 93692
| |||| || ||||| |||||||| | | ||||| ||||
Sbjct 220389 GGTATTTGATGGGAAAGATGACAAAGCAGTGGGGGTTTTCTT 220348
>seq78
Length=6419775
Score = 96.9 bits (106), Expect = 4e-15
Identities = 102/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 93116 TCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174
||||||| || | || | ||||||| ||||| | || || | |||||| || |||||
Sbjct 5585563 TCGTCTC-TGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTT 5585621
Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234
|||||| ||||| || || ||| |||||| || || || ||||||||||| || || ||
Sbjct 5585622 GAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGC 5585681
Query 93235 CACAATACGTTC 93246
||||| ||||||
Sbjct 5585682 CACAACACGTTC 5585693
Score = 87.8 bits (96), Expect = 2e-12
Identities = 94/123 (76%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642
|||| ||| || || ||| | |||||||| || || || ||||| |||||||| | |||
Sbjct 5588651 TGAATGATT-ACCTCCTCGGCCGTCCAAAAGGAGGCCTCCGCTTTCTTGTACATCTGCCA 5588709
Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGG 93702
||||| || |||| || ||||| ||||| || || | ||||| ||| | ||||||||
Sbjct 5588710 GATGTCATGGTATTTGATGGGAAAGATGACGAATCGGTGGGGGTTTTCTCTCAGTAACGG 5588769
Query 93703 CTC 93705
|||
Sbjct 5588770 CTC 5588772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556645566340040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |