Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq70 111 1e-19
seq366 93.3 4e-14
seq28 82.4 6e-11
>seq70
Length=7483708
Score = 111 bits (122), Expect = 1e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || ||||| || || | || || || || |||||||||| || || |
Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || |||| || || ||||||||||| | || ||||| ||
Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || |||||||| ||||||||| | ||||||| || |||| | || |||||
Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742
Query 22396 AACATTCAAAAAGAATCCACC 22416
||||| || ||||| ||||||
Sbjct 5585741 AACATCCAGAAAGAGTCCACC 5585721
>seq366
Length=4409749
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
|||||||||| || || ||| || ||| | || || |||| || || ||||| |
Sbjct 1116396 TCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGATA 1116337
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
|||| || || ||||| || || || | || ||||||||||| || ||| | ||||||
Sbjct 1116336 AGGAAGGCATCCCACCAGACCAGCAGAGGCTGATATTTGCCGGAAAGCAGCTGGAGGATG 1116277
Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
|| |||| | || || |||||||| || ||||| | ||||
Sbjct 1116276 GCCACACCCTGTCGGACTACAACATCCAGAAAGAGTTCACC 1116236
>seq28
Length=9942386
Score = 82.4 bits (90), Expect = 6e-11
Identities = 101/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368
||||||||||| || || | ||| ||||| || | || ||||||||| |||| ||| |
Sbjct 239290 CAAGACAAGGAAGGCATCCTACCTGATCAGCACAGGCTGATATTTGCCAGCAAGCAGCTG 239231
Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428
|| ||| | ||||| | || || || ||||| || ||||| |||||| | || ||||
Sbjct 239230 GA-GATGGCTGCACCCTGTCTGACTATAACATCCAGAAAGAGTCCACCCTGCACCTAGTG 239172
Query 22429 TTGCGATTGCGCGGAGG 22445
|||| |||| || ||
Sbjct 239171 CTGCGCCTGCGTGGTGG 239155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419569825634365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |