Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq70 111 1e-19 seq366 93.3 4e-14 seq28 82.4 6e-11 >seq70 Length=7483708 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || | Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| | || ||||| || Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || |||||||| ||||||||| | ||||||| || |||| | || ||||| Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 5585741 AACATCCAGAAAGAGTCCACC 5585721 >seq366 Length=4409749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||||||||| || || ||| || ||| | || || |||| || || ||||| | Sbjct 1116396 TCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGATA 1116337 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| || || ||||| || || || | || ||||||||||| || ||| | |||||| Sbjct 1116336 AGGAAGGCATCCCACCAGACCAGCAGAGGCTGATATTTGCCGGAAAGCAGCTGGAGGATG 1116277 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || |||| | || || |||||||| || ||||| | |||| Sbjct 1116276 GCCACACCCTGTCGGACTACAACATCCAGAAAGAGTTCACC 1116236 >seq28 Length=9942386 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 ||||||||||| || || | ||| ||||| || | || ||||||||| |||| ||| | Sbjct 239290 CAAGACAAGGAAGGCATCCTACCTGATCAGCACAGGCTGATATTTGCCAGCAAGCAGCTG 239231 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||| | ||||| | || || || ||||| || ||||| |||||| | || |||| Sbjct 239230 GA-GATGGCTGCACCCTGTCTGACTATAACATCCAGAAAGAGTCCACCCTGCACCTAGTG 239172 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| |||| || || Sbjct 239171 CTGCGCCTGCGTGGTGG 239155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419569825634365