Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq498 181 2e-40 seq1345 136 7e-27 seq184 105 1e-17 seq78 102 2e-16 >seq498 Length=2542268 Score = 181 bits (200), Expect = 2e-40 Identities = 403/600 (67%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || |||||||| || |||| ||||||||||||||||| ||| | | | || | || Sbjct 2187056 GCTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTTGG--AGC-GATTTAGCCAA 2187000 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||||| ||||| ||||| |||||||| || ||||| || ||| | Sbjct 2186999 GAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 2186940 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGT 42602 || ||||| ||||| | || || | |||| ||||| ||| | ||| | Sbjct 2186939 CATTCTGAAATGTAC---AGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGG 2186883 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || |||| || || || |||||||| | | ||||||||||| |||||||| Sbjct 2186882 GAGTATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCC 2186823 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | ||||| | || || || | | | || | | || |||||| ||||| Sbjct 2186822 TTGCGTTGGATTTGGGACAAAGAGGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCC 2186763 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || |||||||||||| || | ||| | || || |||||||||||| || ||| Sbjct 2186762 GTGGAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGA 2186706 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 ||||||||| || || || || || || || |||||||| |||||||| | || | Sbjct 2186705 CTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGT 2186646 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 |||||||||||||| ||||| | ||||| |||||||| ||| || || |||| Sbjct 2186645 GACTTTGCCTGCCTGATGTTC---AAGCACCTGGTACACAAGCCATCGGAGCAGAGGGTA 2186589 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | || || | || ||| ||| ||| || ||||||| ||| || | |||| Sbjct 2186588 AAAGAAATAATTGTCAACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCCT 2186529 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 ||| || |||| |||||| | || ||| |||||||| ||| || || ||| Sbjct 2186528 GTGAAGCTCATCGGGATGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGAC 2186469 >seq1345 Length=786133 Score = 136 bits (150), Expect = 7e-27 Identities = 210/299 (70%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| ||||||| || ||||||||||| || || | || || || || |||||| Sbjct 220771 GTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 220830 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| || || |||||||| || || || || || || || |||||||| || Sbjct 220831 CTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGAT 220890 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887 ||||| | ||| | |||||||||||||| ||||| | ||||| |||||||| Sbjct 220891 GAGGGCTTACATTGTGACTTTGCCTGCCTGATGTTC---AAGCACCTGGTACACAAGCCA 220947 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | | || || | || | || || | | | ||| || ||| ||| ||||||||||| Sbjct 220948 TAGGAGCAGAGAGTAAGTAAAATAATTATGAATGCCATGAGGATAGAGCAGGAGTTCCTC 221007 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 ||| || | |||| ||| || |||| ||||||| | | || ||| ||||||| Sbjct 221008 ACGGAGGCCTTGCCTGTGAAGCTTATCGGGATGAACCGCAATCTGATGAAGCAGTACAT 221066 >seq184 Length=3314118 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| ||||||| || ||||| |||||||| || | || || Sbjct 1994211 GGGGAGAGAGTGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCT 1994152 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| ||| || |||||||||||||| || || || || || Sbjct 1994151 GCTATATTCTGGCTGAAGAAGAGAGGCCTC-ATGCCCGGACTCACTTTTTCAAATGAGCT 1994093 Query 42815 CATCAGCAGGGACGAGG 42831 |||||||||||| |||| Sbjct 1994092 CATCAGCAGGGATGAGG 1994076 >seq78 Length=6419775 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| ||||||| || |||||||||||||| || | ||||| ||||| |||||| Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| || || ||||||||| || || || || || || || |||||||| ||| Sbjct 5585624 CTCAAGAAGCGGGGACTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGAC 5585565 Query 42828 GAGG 42831 |||| Sbjct 5585564 GAGG 5585561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943974201094960