Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq25 100 3e-16
seq457 96.9 3e-15
>seq25
Length=8104077
Score = 100 bits (110), Expect = 3e-16
Identities = 186/274 (68%), Gaps = 7/274 (3%)
Strand=Plus/Minus
Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254
|| || ||||||||||| || |||| ||| || || || | || || | || |||
Sbjct 5743368 ATATGTGCATCTCCCAAAGTATGAACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCA 5743309
Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314
| || || | || |||| || ||||| |||||| || || || |||| |||| ||||
Sbjct 5743308 ATCACGTAGATGAACAGGGCATGGCTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCT 5743249
Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAAC 20374
|| ||||| || || | |||| || ||||| || | ||||||| ||| ||||
Sbjct 5743248 CCTGACCTTTGCTAAAAGGGACAAGACAGCTCTCCATTCACTACATAGAATGGACA---- 5743193
Query 20375 AAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATG 20434
|| || || || || |||| || | | || || ||||| ||||||| |||
Sbjct 5743192 ---TGGCAAGGAGGCAGTGCCAGCATGGGAAGATCTTTTGGCTTCCAGGCACACAAGATG 5743136
Query 20435 ATTCTTCTATCGTGCGGATTATTTTTTATTAAAT 20468
|||||||| || | || || ||| ||| | |||
Sbjct 5743135 ATTCTTCTGTCATAAGGGTTGTTTATTAATTAAT 5743102
>seq457
Length=2943904
Score = 96.9 bits (106), Expect = 3e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| |||| ||| || || | |||| ||||||||| |||||||| || || |||| |||
Sbjct 1188180 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCC 1188239
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|||||||| |||| ||| || ||||| || || ||||| || | | ||||| || |||
Sbjct 1188240 ATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGA 1188299
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| | || ||||| || || |||||||
Sbjct 1188300 CAGAGGGCATGGCAGGGAGGCAGTGCCATCA 1188330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441202203895640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |