Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq25 100 3e-16 seq457 96.9 3e-15 >seq25 Length=8104077 Score = 100 bits (110), Expect = 3e-16 Identities = 186/274 (68%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 || || ||||||||||| || |||| ||| || || || | || || | || ||| Sbjct 5743368 ATATGTGCATCTCCCAAAGTATGAACAAAATCACCTGGCTTTAGTCCCATGGTGTGGGCA 5743309 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | || || | || |||| || ||||| |||||| || || || |||| |||| |||| Sbjct 5743308 ATCACGTAGATGAACAGGGCATGGCTGGTAATGTTGAAGGGCACACCCAGGCCCACGTCT 5743249 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAAC 20374 || ||||| || || | |||| || ||||| || | ||||||| ||| |||| Sbjct 5743248 CCTGACCTTTGCTAAAAGGGACAAGACAGCTCTCCATTCACTACATAGAATGGACA---- 5743193 Query 20375 AAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATG 20434 || || || || || |||| || | | || || ||||| ||||||| ||| Sbjct 5743192 ---TGGCAAGGAGGCAGTGCCAGCATGGGAAGATCTTTTGGCTTCCAGGCACACAAGATG 5743136 Query 20435 ATTCTTCTATCGTGCGGATTATTTTTTATTAAAT 20468 |||||||| || | || || ||| ||| | ||| Sbjct 5743135 ATTCTTCTGTCATAAGGGTTGTTTATTAATTAAT 5743102 >seq457 Length=2943904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||| |||||||| || || |||| ||| Sbjct 1188180 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGGGCACGCCCAGGCCC 1188239 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||| ||| || ||||| || || ||||| || | | ||||| || ||| Sbjct 1188240 ATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGA 1188299 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || ||||| || || ||||||| Sbjct 1188300 CAGAGGGCATGGCAGGGAGGCAGTGCCATCA 1188330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441202203895640