Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq874 105 7e-18 >seq874 Length=605229 Score = 105 bits (116), Expect = 7e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| | |||||||||||||| || ||||||| ||||| | Sbjct 547003 AGGGTTACCTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 546944 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| ||||| || ||||| | ||| ||| ||| || ||| | |||| |||| || | Sbjct 546943 TGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAATTTCCTGGGAGAGA 546884 Query 9981 ATCTAAAGACCCT 9993 | || |||||||| Sbjct 546883 AGCTGAAGACCCT 546871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552503168047840