Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq309 114 1e-20
seq31 96.9 4e-15
seq2456 91.5 2e-13
seq1844 91.5 2e-13
seq746 91.5 2e-13
seq470 91.5 2e-13
seq387 91.5 2e-13
seq154 91.5 2e-13
seq6 91.5 2e-13
seq375 89.7 6e-13
seq129 82.4 8e-11
>seq309
Length=1536079
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|||||| | ||| | ||| |||||||||||||||||| |||| || ||| || | ||
Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| ||||||||||||||||| || || | |||||| || | || | | ||||| ||
Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || || | | | | |||||| | ||| || |||| |||||||||
Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || ||||| || || || |||||
Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|||||| | ||| | ||| |||||||||||||||||| ||| ||| || | ||
Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAA----AGTACGACCATC 713398
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| |||||||||||||| || || || | ||||| || | || | | ||||| ||
Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || || | | | | |||||| | ||| || |||| |||||||||
Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || ||||| || || || |||||
Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq31
Length=11202321
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || ||||||||||||||||| | || | || ||| ||
Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| || | | ||||| || | ||||| || | ||||||
Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 8041146
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1386002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1386061
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1386062 TACTAACGAGGA 1386073
>seq2456
Length=20424
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4484 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4543
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 4544 ATACTAACGGGGA 4556
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 20055 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 20114
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 20115 ATACTAACGGGGA 20127
>seq1844
Length=33621
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 363 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 304
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 303 ATACTAACGGGGA 291
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 9132 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9073
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 9072 ATACTAACGGGGA 9060
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 26051 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 26110
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 26111 ATACTAACGGGGA 26123
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 32923 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTACT 32982
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 32983 ATACTAACGGGGA 32995
>seq746
Length=847536
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 807479 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 807538
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 807539 TACTAACGAGGAT 807551
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 840498 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGGGGA 840440
>seq470
Length=2777046
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2748964 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2749023
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 2749024 ATACTAACGGGGA 2749036
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
|||||||| | | |||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 2770980 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGGGTGACAGGCGGGGATACTCACCACT 2770921
Query 57066 ATACTACCGAGGA 57078
|||||| || |||
Sbjct 2770920 ATACTAACGGGGA 2770908
>seq387
Length=3314187
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 191350 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 191291
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 191290 ATACTAACGAGGA 191278
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 230732 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 230791
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 230792 CTATACTAACGAGGA 230806
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
||||| | | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 197846 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 197787
Query 57067 TACTACCGAGGATTG 57081
||||| | |||| ||
Sbjct 197786 TACTAACAAGGAATG 197772
>seq154
Length=6791889
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|||||| | ||| | ||| ||||| ||||||| |||| |||| || ||| || | ||
Sbjct 1707851 CAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATC 1707792
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| ||||||||||||||||| | || | |||||| || | || | | | ||| ||
Sbjct 1707791 TTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATC 1707732
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || || | | | | |||||| | ||| || |||| | |||||||
Sbjct 1707731 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGT 1707672
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || ||||| || || || |||||
Sbjct 1707671 TTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq6
Length=12818899
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2560922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2560863
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2560862 ATACTAACGAGGA 2560850
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2563967 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2563908
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2563907 ATACTAACGAGGA 2563895
>seq375
Length=1960377
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 853673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 853614
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 853613 TACTAACGAGGA 853602
>seq129
Length=5885081
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 567342 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 567283
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 567282 ATACTAACGAGGA 567270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543002841462640
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