Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq31 118 1e-21 seq37 102 8e-17 seq145 87.8 2e-12 >seq6 Length=12818899 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 2580472 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 2580413 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || ||| ||| Sbjct 2580412 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGGATCTTTGCCTTG 2580353 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || |||| || | |||||| || || || ||| Sbjct 2580352 ACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTACCAGTTAAGGTT 2580293 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 2580292 TTCACGAAGATCTGCATT 2580275 >seq31 Length=11202321 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 64279 GGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 |||||| | ||||| ||||||||||| ||| | ||||| ||||||||||| || || || Sbjct 8040976 GGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGAT 8041035 Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 || ||||| || || || || ||| ||| ||| | || |||| || |||||||| Sbjct 8041036 GCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTC 8041095 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | |||||||||||||| || || ||||| || |||||||| Sbjct 8041096 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 8039971 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCG 8040030 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||| ||||||||||| || || || || ||||| || || || || Sbjct 8040031 GCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTT 8040083 >seq37 Length=11501336 Score = 102 bits (112), Expect = 8e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTC-GGGAGGAAT 64338 ||||| | ||||| ||||||||||| | | | ||||| || |||||||| |||||| || Sbjct 11476721 GTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGG-AT 11476779 Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 || |||| || || || || ||| ||| ||| | ||||||| | ||||| || Sbjct 11476780 GCCCTCTTCATCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCTC 11476839 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | |||||||| ||||| || || ||||| ||||||||||| Sbjct 11476840 TAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTTT 11476887 >seq145 Length=4974917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || |||||||||| ||| | | |||| | ||||| ||||||||||| ||| | ||| Sbjct 2387806 TTCTGAATGTTGTGATCAGAAAGGGTGTAGCCATCTTCCAGCTGCTTGCCAGCAAAGATG 2387747 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 |||| ||||||||| || | || || | ||| || || || || ||| ||| ||| Sbjct 2387746 AGCCTCTGCTGGTCAGGGGTTATGCCCTTTTTATCCTGGATCTTGGCCTTCACATTCTCA 2387687 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 || |||| || ||||| |||| || | ||| ||| |||| || || || || Sbjct 2387686 GTGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTGTTGTGAGTCAGGGTCTTCACAAAG 2387627 Query 64436 ATTTGCATTTT 64446 |||| |||||| Sbjct 2387626 ATTTTCATTTT 2387616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499451681039240