Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 2e-23
seq31 118 1e-21
seq37 102 8e-17
seq145 87.8 2e-12
>seq6
Length=12818899
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | |||||| | ||||| |||||||||||
Sbjct 2580472 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 2580413
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || |||| ||||||||| || || || || ||||| || || || ||| |||
Sbjct 2580412 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGGATCTTTGCCTTG 2580353
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || || || |||| || | |||||| || || || |||
Sbjct 2580352 ACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTACCAGTTAAGGTT 2580293
Query 64427 TTTACGAAAATTTGCATT 64444
|| ||||| || ||||||
Sbjct 2580292 TTCACGAAGATCTGCATT 2580275
>seq31
Length=11202321
Score = 118 bits (130), Expect = 1e-21
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 64279 GGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338
|||||| | ||||| ||||||||||| ||| | ||||| ||||||||||| || || ||
Sbjct 8040976 GGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGAT 8041035
Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
|| ||||| || || || || ||| ||| ||| | || |||| || ||||||||
Sbjct 8041036 GCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTC 8041095
Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | |||||||||||||| || || ||||| || ||||||||
Sbjct 8041096 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | |||||| | ||||| ||||||||||||
Sbjct 8039971 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCG 8040030
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| | ||||| ||||||||||| || || || || ||||| || || || ||
Sbjct 8040031 GCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGGATCTT 8040083
>seq37
Length=11501336
Score = 102 bits (112), Expect = 8e-17
Identities = 125/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTC-GGGAGGAAT 64338
||||| | ||||| ||||||||||| | | | ||||| || |||||||| |||||| ||
Sbjct 11476721 GTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGG-AT 11476779
Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
|| |||| || || || || ||| ||| ||| | ||||||| | ||||| ||
Sbjct 11476780 GCCCTCTTCATCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCTC 11476839
Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| || | |||||||| ||||| || || ||||| |||||||||||
Sbjct 11476840 TAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTTT 11476887
>seq145
Length=4974917
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
|| |||||||||| ||| | | |||| | ||||| ||||||||||| ||| | |||
Sbjct 2387806 TTCTGAATGTTGTGATCAGAAAGGGTGTAGCCATCTTCCAGCTGCTTGCCAGCAAAGATG 2387747
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
|||| ||||||||| || | || || | ||| || || || || ||| ||| |||
Sbjct 2387746 AGCCTCTGCTGGTCAGGGGTTATGCCCTTTTTATCCTGGATCTTGGCCTTCACATTCTCA 2387687
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
|| |||| || ||||| |||| || | ||| ||| |||| || || || ||
Sbjct 2387686 GTGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTGTTGTGAGTCAGGGTCTTCACAAAG 2387627
Query 64436 ATTTGCATTTT 64446
|||| ||||||
Sbjct 2387626 ATTTTCATTTT 2387616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499451681039240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |