Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq309 91.5 1e-13 seq657 82.4 8e-11 >seq309 Length=1536079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | |||||||||||||| ||||| || || |||||| || Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | |||| || | ||| || || ||||| |||||||| || || Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || || ||||||||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | |||||||||||||| ||||| || | |||||| || Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGACCATC 713398 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | || || || ||||| |||||||| || || Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || || ||||||||||| Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq657 Length=1571634 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| || || || | ||| |||||||||||||| ||| |||| |||||||| ||| Sbjct 950059 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTG 950000 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || ||||| || | |||||| |||||||||| || ||| ||||| Sbjct 949999 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 949950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496070588379120