Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq309 113 4e-20
seq31 93.3 4e-14
seq423 86.0 6e-12
>seq309
Length=1536079
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | || ||||| |||||||||||||| ||
Sbjct 714836 GCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA 714777
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || ||| || ||||| || |||||| |||||| | ||||||||| |||
Sbjct 714776 GACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGA 714717
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| | ||||||| ||
Sbjct 714716 GGAATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCA 714657
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| || | ||||| || || || || || || |||||||||||
Sbjct 714656 ACCTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | || ||||| |||||||||||||| ||
Sbjct 713470 GCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC- 713412
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || ||| ||| || ||||| || ||||| |||||| | |||||||| |||
Sbjct 713411 ---AAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGA 713355
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| | ||||||| ||
Sbjct 713354 GGAATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCA 713295
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| || | ||||| || || || || || || |||||||||||
Sbjct 713294 ACCTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq31
Length=11202321
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009
||||| ||| || ||||| || ||||| |||| | ||||||||| || || || |||
Sbjct 8040977 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATG 8041036
Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069
||||| || ||| ||| || ||||| | |||| |||||| | ||| |||||
Sbjct 8041037 CCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCC 8041096
Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||| | || ||||||||||| || || || || ||||||||
Sbjct 8041097 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140
>seq423
Length=2413410
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | || ||||| |||||||||||||| ||
Sbjct 7516 GCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA 7457
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || ||| || ||||| || |||| | ||||| | ||||||||| |||
Sbjct 7456 GACAAAGTACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGA 7397
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| || ||| || ||| | | ||| | |||||| | ||
Sbjct 7396 GGAATTCCTTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCA 7337
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | ||||| || || || || || || || ||||||||
Sbjct 7336 ATCTCAAGTGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475317012997040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |