Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq131 172 8e-38
seq872 111 2e-19
>seq131
Length=6132816
Score = 172 bits (190), Expect = 8e-38
Identities = 209/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| ||||||||||| ||| ||||| |||||||||| || || || | |||
Sbjct 4275346 AAGGGACAGCCCTTCACATTATTACAGATGAGTGACTGAATGGAAGCAGTGTTGATGATC 4275405
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| || || || || || || || ||||| || |||||||| || || ||||||
Sbjct 4275406 TTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 4275465
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || || || | ||| |||| || |||
Sbjct 4275466 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 4275525
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | |||||||| ||||| || | | | ||| || || || | || |||| |
Sbjct 4275526 ATGGCATCCGGACGCGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 4275585
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| | ||||||||||||||||| || || || |||||||| |||
Sbjct 4275586 TCACTGTAGAGGGCTTCCAACTCCGCGGCCATTTCCTTCTCTCCT 4275630
Score = 140 bits (154), Expect = 5e-28
Identities = 208/293 (71%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491
||| ||||| |||||||| ||||| || || || || |||| | |||||| | | |||
Sbjct 4276440 CCGGCCGGCGATCTGTCTGGTGAATGACTCCACAAACTGGGTGAGTCCGTGTTCAACGAG 4276499
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551
|||||| |||||||| | ||| |||| | | |||| | || | || ||||
Sbjct 4276500 GATGGAGTTGTTGTAGAGGAACTGTTTGAAGTTGTACTCCTGCTCTTCGATCTGAAAGGT 4276559
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
||||||| ||||| |||||| | ||||| || ||||| || || || || ||||||||
Sbjct 4276560 GTCAGGCAGCAGAGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 4276619
Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
|||||| || | ||| ||| || | ||||||||| || | || | |||||||||
Sbjct 4276620 GTACTGGAACTGCTGGT--TGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 4276677
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
|| || || ||||| || || | | ||| | ||| || || || || || ||
Sbjct 4276678 CCACTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCTCCTGT 4276730
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | ||
Sbjct 4278309 TCTTACCCCATGGCCCAGTCCTCGGGTGAATCCAGGTCCTCGTTTCTGATCTGTCTTGAA 4278368
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || || || || | || || || ||||||| || ||||| ||||| ||
Sbjct 4278369 AAACTGATGAGTGAAATGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGGTC 4278428
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| ||| | |||| | | |||||| |||| || | | ||||||| || ||
Sbjct 4278429 AGGGATGAAGTTTCTCCTTAGGAGAACTTTTTCCAGAACTTCTTTTGAATCAGGAAG 4278485
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| || || ||||| || | ||| ||
Sbjct 4279053 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACTGGAGGAAGGGCTCTGGTG 4279112
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| || || || || || |||||| | ||||| ||||| | | |||||
Sbjct 4279113 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 4279172
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||||||||||| | || ||||||
Sbjct 4279173 GGTGGACTGTCAATCAAATGTGATCTGGCT 4279202
>seq872
Length=978185
Score = 111 bits (122), Expect = 2e-19
Identities = 173/245 (71%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || || | || ||||| || || || || || |||||||| ||||| ||| |
Sbjct 45730 GCTGTGTTGACAAGGTTGAAACCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCT 45789
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|| || || ||| || | | ||| || || | |||||| |||||||| | ||| ||
Sbjct 45790 GGAGAACAAATGGGATTTCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATC 45849
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTAGAG 9114
|| ||||| || ||||||| ||| | ||||| | || | |||| | |||||
Sbjct 45850 ATACTCTCCCCAAAGATGGAGTTGGGCTGACACTTTTCCA-GAAGTAGCCCCGGGTAGAA 45908
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | ||| |||| ||| ||||| | |||||||||| || || ||||||||||| ||
Sbjct 45909 CTCTAAAGCATCGATGTCACCATATAACTCTTCCAACTCAGCGGCCATCTCCTTCTCTCC 45968
Query 9175 TACAA 9179
| |||
Sbjct 45969 TGCAA 45973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723448270081400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |