Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq131 172 8e-38 seq872 111 2e-19 >seq131 Length=6132816 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | ||| Sbjct 4275346 AAGGGACAGCCCTTCACATTATTACAGATGAGTGACTGAATGGAAGCAGTGTTGATGATC 4275405 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | || || || || || || || ||||| || |||||||| || || |||||| Sbjct 4275406 TTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 4275465 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 4275466 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 4275525 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | |||||||| ||||| || | | | ||| || || || | || |||| | Sbjct 4275526 ATGGCATCCGGACGCGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 4275585 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| || || || |||||||| ||| Sbjct 4275586 TCACTGTAGAGGGCTTCCAACTCCGCGGCCATTTCCTTCTCTCCT 4275630 Score = 140 bits (154), Expect = 5e-28 Identities = 208/293 (71%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| ||||| |||||||| ||||| || || || || |||| | |||||| | | ||| Sbjct 4276440 CCGGCCGGCGATCTGTCTGGTGAATGACTCCACAAACTGGGTGAGTCCGTGTTCAACGAG 4276499 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| |||| | | |||| | || | || |||| Sbjct 4276500 GATGGAGTTGTTGTAGAGGAACTGTTTGAAGTTGTACTCCTGCTCTTCGATCTGAAAGGT 4276559 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||||| |||||| | ||||| || ||||| || || || || |||||||| Sbjct 4276560 GTCAGGCAGCAGAGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 4276619 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| || | ||| ||| || | ||||||||| || | || | ||||||||| Sbjct 4276620 GTACTGGAACTGCTGGT--TGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 4276677 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| || || | | ||| | ||| || || || || || || Sbjct 4276678 CCACTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCTCCTGT 4276730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | || Sbjct 4278309 TCTTACCCCATGGCCCAGTCCTCGGGTGAATCCAGGTCCTCGTTTCTGATCTGTCTTGAA 4278368 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || || || || | || || || ||||||| || ||||| ||||| || Sbjct 4278369 AAACTGATGAGTGAAATGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGGTC 4278428 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| ||| | |||| | | |||||| |||| || | | ||||||| || || Sbjct 4278429 AGGGATGAAGTTTCTCCTTAGGAGAACTTTTTCCAGAACTTCTTTTGAATCAGGAAG 4278485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || | ||| || Sbjct 4279053 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACTGGAGGAAGGGCTCTGGTG 4279112 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || || |||||| | ||||| ||||| | | ||||| Sbjct 4279113 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTTTTGTAACCATAGTGCACATTGTAAGTT 4279172 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 4279173 GGTGGACTGTCAATCAAATGTGATCTGGCT 4279202 >seq872 Length=978185 Score = 111 bits (122), Expect = 2e-19 Identities = 173/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || ||||| || || || || || |||||||| ||||| ||| | Sbjct 45730 GCTGTGTTGACAAGGTTGAAACCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCT 45789 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| || | | ||| || || | |||||| |||||||| | ||| || Sbjct 45790 GGAGAACAAATGGGATTTCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATC 45849 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTAGAG 9114 || ||||| || ||||||| ||| | ||||| | || | |||| | ||||| Sbjct 45850 ATACTCTCCCCAAAGATGGAGTTGGGCTGACACTTTTCCA-GAAGTAGCCCCGGGTAGAA 45908 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| |||| ||| ||||| | |||||||||| || || ||||||||||| || Sbjct 45909 CTCTAAAGCATCGATGTCACCATATAACTCTTCCAACTCAGCGGCCATCTCCTTCTCTCC 45968 Query 9175 TACAA 9179 | ||| Sbjct 45969 TGCAA 45973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723448270081400