Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq309 150 4e-31
seq38 136 9e-27
seq154 132 1e-25
seq6 129 1e-24
seq423 127 5e-24
seq31 113 1e-19
seq37 102 2e-16
seq647 89.7 1e-12
seq872 86.0 1e-11
seq81 86.0 1e-11
seq4 86.0 1e-11
>seq309
Length=1536079
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| ||||| || || || ||||||||||| | ||||| |||| ||||||
Sbjct 714827 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 714768
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || |||||||| || | |||||| || ||| ||| |||
Sbjct 714767 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCT 714708
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | ||||| | | ||| || || | |
Sbjct 714707 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 714648
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || |||||||| || ||||| ||||| ||
Sbjct 714647 GTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 714610
Score = 122 bits (134), Expect = 2e-22
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| ||||| || || || ||||||||||| | ||||| ||| ||||
Sbjct 713461 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA----AAGTA 713406
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || || ||||| || | ||||| || ||| ||| |||
Sbjct 713405 CGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCT 713346
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| | ||| | ||||| | | ||| || || | |
Sbjct 713345 TCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 713286
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || |||||||| || ||||| ||||| ||
Sbjct 713285 GTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 713248
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| |||||||| || |||||| |||||||||| | |||||| | || ||||| | ||
Sbjct 714733 CTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAA 714792
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| || ||||| ||||| |||||||||||
Sbjct 714793 AAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 714827
>seq38
Length=12148825
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||||| ||||| || || || ||||||| ||| | ||||||||| ||||||
Sbjct 10461004 CGAAGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 10461063
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || |||||| | || | |||||| || ||| |||||||
Sbjct 10461064 CGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCT 10461123
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| |||| ||| || ||| | ||||| | | ||| || || | |
Sbjct 10461124 TCCTTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGC 10461183
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623
||||| || || ||| | || || |||||||||||
Sbjct 10461184 GTGATGGTTTTCCCCATAAGGGTCTTCACAAAAAT 10461218
>seq154
Length=6791889
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| ||||| || || || ||||||| ||| | ||||||||| ||||||
Sbjct 1707859 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 1707800
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || |||||| | || | |||||| || ||| |||||||
Sbjct 1707799 CGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCT 1707740
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
| ||||| ||||| ||| || ||| | ||||| | | ||| || || | |
Sbjct 1707739 TGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 1707680
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || |||||||| || ||||| || || ||
Sbjct 1707679 ATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTG 1707642
>seq6
Length=12818899
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| ||||| || |||| ||||||||||| || || | ||||||
Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| || | ||||||||| || || || ||| |||
Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| |||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | |||||||| || || ||
Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTG 2580279
>seq423
Length=2413410
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| ||||| || || || ||||||||||| | ||||| |||| ||||||
Sbjct 7507 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 7448
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || | |||||| | | |||||| || ||| |||||||
Sbjct 7447 CGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCT 7388
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||| ||||| ||| || ||| | |||||||| | ||| | || |
Sbjct 7387 TCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGT 7328
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || || || ||||| || || ||
Sbjct 7327 GTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTG 7290
>seq31
Length=11202321
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||||| || |||| ||||||||||| | ||| | ||||||
Sbjct 8039956 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 8040015
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| |||||||| ||||||||||| || || || ||| |||
Sbjct 8040016 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCC 8040075
Query 199538 TGAATCTTTTGCTTCAC 199554
|| ||||| ||||||
Sbjct 8040076 TGGATCTTGGCCTTCAC 8040092
Score = 93.3 bits (102), Expect = 1e-13
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
||||||||||||||||| || || |||||||| ||||||||||| || || || |||
Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||| ||||| ||| || |||| |||||| | | || || |||| |||
Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641
|| ||||| || || || || ||||| || || || |||||| ||||
Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG---CATTTTGACCTT 8041149
>seq37
Length=11501336
Score = 102 bits (112), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||| | || |||| ||||||||| | ||| | ||||||
Sbjct 11476676 AGGACCAGGTGCAGGGTGGACCCTTTCTGGA---TGTAGTCAGAAAGAGTGCGGCCATCT 11476732
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || | |||||||| || |||||||| || | || || ||| |||
Sbjct 11476733 TCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGGATGCCCTCTTCATCC 11476792
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 11476793 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCTCTAGGGTGATGGTC 11476852
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| | || || || ||||| || ||||| ||||||
Sbjct 11476853 TTGCTGGTCAGGGTCTTCACGAAGATTTG---CATTTT 11476887
>seq647
Length=1633594
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||| | |||||||||| |||||| | ||||||||||||||||| || |||||||
Sbjct 256745 CCTTTTGAATATTGTAGTCAGACAAAGTACGACCATCTTCCAGCTGCTTACCAGCGAAGA 256804
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || | |||||| || ||| |||||||
Sbjct 256805 TCAGCCTCTGCTGATCAGGAGGAATTCCT 256833
>seq872
Length=978185
Score = 86.0 bits (94), Expect = 1e-11
Identities = 93/122 (76%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||| ||| ||||| | ||||| ||||||||||| | |||||||||| ||||||
Sbjct 165135 CGAAGTTTCAACACAAGATAAAGAGTGGACTCCTTTTGAATTTTGTAGTCAGACAAAGTA 165076
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || || | ||| | | ||||| || ||| ||| ||
Sbjct 165075 CAGCCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAGGAGGAATCCCC 165017
Query 199529 TC 199530
||
Sbjct 165016 TC 165015
>seq81
Length=7769405
Score = 86.0 bits (94), Expect = 1e-11
Identities = 78/96 (81%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||||| || |||| |||||| |||| ||||| ||||||
Sbjct 54602 AGGACCAGGTGCAGGGT-GACTCTTTCTGGATGTTGTAATCAG--AAAGTGTGGCCATCT 54546
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG 199513
||||||||||| || || |||||||| |||||||||
Sbjct 54545 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGG 54510
>seq4
Length=18898765
Score = 86.0 bits (94), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||||| || |||| ||||||||||| | ||| | | ||||
Sbjct 11612658 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCT 11612717
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| | ||| | ||||| | || |||||| || || || ||| ||
Sbjct 11612718 TCCAGCTGCTTGCTGGC--AAATGAGTCACTACTGGTCAGG-GGGATGCCCTCTTTATCT 11612774
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| |||||| | | || | || | ||||| |||
Sbjct 11612775 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTC 11612834
Query 199598 TTACCCGTGAGAGTTTTC 199615
|| || || || ||| ||
Sbjct 11612835 TTGCCAGTCAGGGTTCTC 11612852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178454540366707
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