Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq309 150 4e-31 seq38 136 9e-27 seq154 132 1e-25 seq6 129 1e-24 seq423 127 5e-24 seq31 113 1e-19 seq37 102 2e-16 seq647 89.7 1e-12 seq872 86.0 1e-11 seq81 86.0 1e-11 seq4 86.0 1e-11 >seq309 Length=1536079 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || || || ||||||||||| | ||||| |||| |||||| Sbjct 714827 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 714768 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| || | |||||| || ||| ||| ||| Sbjct 714767 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCT 714708 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 714707 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 714648 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| || ||||| ||||| || Sbjct 714647 GTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 714610 Score = 122 bits (134), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || || || ||||||||||| | ||||| ||| |||| Sbjct 713461 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA----AAGTA 713406 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | ||||| || ||| ||| ||| Sbjct 713405 CGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCT 713346 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| | ||| | ||||| | | ||| || || | | Sbjct 713345 TCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 713286 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| || ||||| ||||| || Sbjct 713285 GTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 713248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||||||||| | |||||| | || ||||| | || Sbjct 714733 CTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAATATTCAA 714792 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||| ||||| ||||||||||| Sbjct 714793 AAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 714827 >seq38 Length=12148825 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||| ||||| || || || ||||||| ||| | ||||||||| |||||| Sbjct 10461004 CGAAGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 10461063 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| || |||||| | || | |||||| || ||| ||||||| Sbjct 10461064 CGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCT 10461123 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||| ||| || ||| | ||||| | | ||| || || | | Sbjct 10461124 TCCTTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGC 10461183 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| || || ||| | || || ||||||||||| Sbjct 10461184 GTGATGGTTTTCCCCATAAGGGTCTTCACAAAAAT 10461218 >seq154 Length=6791889 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || || || ||||||| ||| | ||||||||| |||||| Sbjct 1707859 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTA 1707800 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||| | || | |||||| || ||| ||||||| Sbjct 1707799 CGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCT 1707740 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 | ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 1707739 TGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGC 1707680 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || |||||||| || ||||| || || || Sbjct 1707679 ATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTG 1707642 >seq6 Length=12818899 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||||| || || | |||||| Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| || || || ||| ||| Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | |||||||| || || || Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTG 2580279 >seq423 Length=2413410 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || || || ||||||||||| | ||||| |||| |||||| Sbjct 7507 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTA 7448 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || | |||||| | | |||||| || ||| ||||||| Sbjct 7447 CGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCT 7388 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||| ||||| ||| || ||| | |||||||| | ||| | || | Sbjct 7387 TCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGT 7328 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || ||||| || || || Sbjct 7327 GTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTG 7290 >seq31 Length=11202321 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 8039956 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCT 8040015 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| |||||||| ||||||||||| || || || ||| ||| Sbjct 8040016 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCC 8040075 Query 199538 TGAATCTTTTGCTTCAC 199554 || ||||| |||||| Sbjct 8040076 TGGATCTTGGCCTTCAC 8040092 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| || || |||||||| ||||||||||| || || || ||| Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || |||| |||||| | | || || |||| ||| Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 || ||||| || || || || ||||| || || || |||||| |||| Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTG---CATTTTGACCTT 8041149 >seq37 Length=11501336 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||| | || |||| ||||||||| | ||| | |||||| Sbjct 11476676 AGGACCAGGTGCAGGGTGGACCCTTTCTGGA---TGTAGTCAGAAAGAGTGCGGCCATCT 11476732 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || | |||||||| || |||||||| || | || || ||| ||| Sbjct 11476733 TCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGGATGCCCTCTTCATCC 11476792 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 11476793 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCTCTAGGGTGATGGTC 11476852 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || | || || || ||||| || ||||| |||||| Sbjct 11476853 TTGCTGGTCAGGGTCTTCACGAAGATTTG---CATTTT 11476887 >seq647 Length=1633594 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | |||||||||| |||||| | ||||||||||||||||| || ||||||| Sbjct 256745 CCTTTTGAATATTGTAGTCAGACAAAGTACGACCATCTTCCAGCTGCTTACCAGCGAAGA 256804 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 256805 TCAGCCTCTGCTGATCAGGAGGAATTCCT 256833 >seq872 Length=978185 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||| ||| ||||| | ||||| ||||||||||| | |||||||||| |||||| Sbjct 165135 CGAAGTTTCAACACAAGATAAAGAGTGGACTCCTTTTGAATTTTGTAGTCAGACAAAGTA 165076 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || | ||| | | ||||| || ||| ||| || Sbjct 165075 CAGCCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAGGAGGAATCCCC 165017 Query 199529 TC 199530 || Sbjct 165016 TC 165015 >seq81 Length=7769405 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| |||| ||||| |||||| Sbjct 54602 AGGACCAGGTGCAGGGT-GACTCTTTCTGGATGTTGTAATCAG--AAAGTGTGGCCATCT 54546 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG 199513 ||||||||||| || || |||||||| ||||||||| Sbjct 54545 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGG 54510 >seq4 Length=18898765 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| ||||||||||| | ||| | | |||| Sbjct 11612658 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCT 11612717 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| | ||| | ||||| | || |||||| || || || ||| || Sbjct 11612718 TCCAGCTGCTTGCTGGC--AAATGAGTCACTACTGGTCAGG-GGGATGCCCTCTTTATCT 11612774 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || | || | ||||| ||| Sbjct 11612775 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTC 11612834 Query 199598 TTACCCGTGAGAGTTTTC 199615 || || || || ||| || Sbjct 11612835 TTGCCAGTCAGGGTTCTC 11612852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178454540366707