Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq70 107 2e-18 seq6 105 8e-18 seq31 102 9e-17 seq120 98.7 1e-15 seq309 96.9 4e-15 seq37 89.7 6e-13 >seq70 Length=7483708 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| ||||| || ||| || ||||| || || || || || ||| | Sbjct 5585704 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGA 5585763 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| || ||||||| ||||||||| | || | | |||||| Sbjct 5585764 TCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTG 5585823 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| || | | ||||| || | || || || | |||||| Sbjct 5585824 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||||||||| || || |||||||| ||||| ||| Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922 >seq6 Length=12818899 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||||| |||| || ||| || ||||| |||||||| || Sbjct 2580502 CCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2580443 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 2580442 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2580383 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| |||||| |||||| ||||| || | | ||||| || | || || Sbjct 2580382 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2580323 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || | ||||| || ||||| |||||| Sbjct 2580322 TCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq31 Length=11202321 Score = 102 bits (112), Expect = 9e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || || | ||||||||||| | || Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || ||| |||||| ||||| || | | ||||| || | ||||| Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACT 8041093 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 8041094 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || || | ||| | ||||| |||| || ||| || ||||| |||| Sbjct 8039933 ATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGT 8039992 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 |||| || ||||||||| | || || |||||||||||||| || || | |||||||||| Sbjct 8039993 AGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGT 8040052 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 | | || | || ||| || ||| |||||| Sbjct 8040053 CTGGGGGGATGCCCTCTTTATCCTGGATCTT 8040083 >seq120 Length=4857412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 46384 CACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 |||||||||||| || ||||| || ||||| |||||||| || ||||||| | || Sbjct 3874451 CACCAGATGCAAGATGGACTCT--TTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCC 3874394 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || ||||||||||| || ||| ||| | ||||||||| | | | || |||||||| Sbjct 3874393 TCCAGCTGCTTGCCAGCAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCT 3874334 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| ||||| || | ||||| || | || || | |||||||| Sbjct 3874333 TGGATCTTAGCCTTGACATTCTTGATGGTGTCACTGAGCTAGACCTCAAGAGTGATGGTC 3874274 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||||| |||| || || || ||||| | |||||| Sbjct 3874273 TTGCCCCTCAGGGTCTTCACGAAGATCTTTGTTTTGC 3874237 >seq309 Length=1536079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | || ||||||||| |||||||| || || | ||| || | || Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||||||| || ||||| |||| | |||||| || | || | | ||||| || Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | |||||| | ||| || || | ||||||||| Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || || || ||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 >seq37 Length=11501336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || |||||||| | || || ||||||||||| | || || | || |||| Sbjct 11476707 TGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCT 11476766 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | | | || ||| | ||| |||||| ||||| || | | || || | Sbjct 11476767 GGTCAGGGAGGATGCCCTCTTCATCCTGGATCTTGGCCTTGACATTCTCGATGGTATCAC 11476826 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 | | ||||| || | |||||||| |||| ||||| || || || ||||||||||||| Sbjct 11476827 TAGGCTCCACCTCTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTT 11476886 Query 46596 TG 46597 || Sbjct 11476887 TG 11476888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565019928292920