Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq70 107 2e-18
seq6 105 8e-18
seq31 102 9e-17
seq120 98.7 1e-15
seq309 96.9 4e-15
seq37 89.7 6e-13
>seq70
Length=7483708
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| ||||| || ||| || ||||| || || || || || ||| |
Sbjct 5585704 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGA 5585763
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||| ||||| || ||||||| ||||||||| | || | | ||||||
Sbjct 5585764 TCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTG 5585823
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| |||||| ||||| || | | ||||| || | || || || | ||||||
Sbjct 5585824 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||||||||| || || |||||||| ||||| |||
Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922
>seq6
Length=12818899
Score = 105 bits (116), Expect = 8e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || || | ||| | ||||| |||| || ||| || ||||| |||||||| ||
Sbjct 2580502 CCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2580443
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || ||||||||||| || || |||| | ||||||||| | ||
Sbjct 2580442 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2580383
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||| |||||| |||||| ||||| || | | ||||| || | || ||
Sbjct 2580382 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2580323
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | |||||||| || || || | ||||| || ||||| ||||||
Sbjct 2580322 TCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq31
Length=11202321
Score = 102 bits (112), Expect = 9e-17
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || ||||||||||| || || || | ||||||||||| | ||
Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||| || ||| |||||| ||||| || | | ||||| || | |||||
Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACT 8041093
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| |||||||| ||||| ||||| || || || ||||| |||||||||
Sbjct 8041094 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 8041144
Score = 96.9 bits (106), Expect = 4e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418
|||| | ||| || || | ||| | ||||| |||| || ||| || ||||| ||||
Sbjct 8039933 ATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGT 8039992
Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478
|||| || ||||||||| | || || |||||||||||||| || || | ||||||||||
Sbjct 8039993 AGTCAGAAAGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGT 8040052
Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
| | || | || ||| || ||| ||||||
Sbjct 8040053 CTGGGGGGATGCCCTCTTTATCCTGGATCTT 8040083
>seq120
Length=4857412
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441
|||||||||||| || ||||| || ||||| |||||||| || ||||||| | ||
Sbjct 3874451 CACCAGATGCAAGATGGACTCT--TTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCC 3874394
Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501
|| ||||||||||| || ||| ||| | ||||||||| | | | || ||||||||
Sbjct 3874393 TCCAGCTGCTTGCCAGCAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCT 3874334
Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561
|||||| ||||| || | ||||| || | || || | ||||||||
Sbjct 3874333 TGGATCTTAGCCTTGACATTCTTGATGGTGTCACTGAGCTAGACCTCAAGAGTGATGGTC 3874274
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|||||| |||| || || || ||||| | ||||||
Sbjct 3874273 TTGCCCCTCAGGGTCTTCACGAAGATCTTTGTTTTGC 3874237
>seq309
Length=1536079
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | || ||||||||| |||||||| || || | ||| || | ||
Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| |||||||| || ||||| |||| | |||||| || | || | | ||||| ||
Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | |||||| | ||| || || | |||||||||
Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || || || |||||
Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
>seq37
Length=11501336
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475
||||||| || |||||||| | || || ||||||||||| | || || | || ||||
Sbjct 11476707 TGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCT 11476766
Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535
|||| | | | || ||| | ||| |||||| ||||| || | | || || |
Sbjct 11476767 GGTCAGGGAGGATGCCCTCTTCATCCTGGATCTTGGCCTTGACATTCTCGATGGTATCAC 11476826
Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595
| | ||||| || | |||||||| |||| ||||| || || || |||||||||||||
Sbjct 11476827 TAGGCTCCACCTCTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTT 11476886
Query 46596 TG 46597
||
Sbjct 11476887 TG 11476888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565019928292920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |