Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq498 208 8e-49 seq1345 183 3e-41 seq6 127 2e-24 seq31 98.7 1e-15 seq309 82.4 8e-11 seq70 82.4 8e-11 seq37 82.4 8e-11 seq4 82.4 8e-11 >seq498 Length=2542268 Score = 208 bits (230), Expect = 8e-49 Identities = 516/776 (66%), Gaps = 33/776 (4%) Strand=Plus/Plus Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||||||||| ||||| ||||||||||| ||| ||| ||| || | || | || Sbjct 2186463 CAGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAG 2186522 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 ||| |||| || || || || || ||||| || || |||| | | || Sbjct 2186523 CTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTAT 2186582 Query 132843 TTCCCTAACGCGC-GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 ||| | || | | || || | ||| || |||| ||||||||||||| ||| |||| Sbjct 2186583 TTCTTTTACCCTCTGCTCCGAT-GGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 2186641 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 |||| || || ||||||||||| ||| || || || ||| || || | |||||||| Sbjct 2186642 AGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 2186701 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 | || || | || |||||||| ||||| | | |||| || ||||||| ||| | Sbjct 2186702 TCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTT 2186758 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 | ||||| || || || || | || || | | | || || |||||| ||||| | Sbjct 2186759 CCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAAC 2186818 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141 ||| ||||| |||||||| | || || | ||||||||||| || || | || | | Sbjct 2186819 GCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGA- 2186877 Query 133142 GGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 | | |||| | || | | | ||||||||| || ||| |||||||| || Sbjct 2186878 -TACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGA 2186936 Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259 |||| ||| |||||||| ||||| ||||| || || || || ||||| || || || Sbjct 2186937 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAAC 2186996 Query 133260 TTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 |||||| || ||| |||| ||| || || ||||| |||| ||| || || ||||| | Sbjct 2186997 TTCTTG-GCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGA 2187052 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGC 133377 | || | ||||| || ||||| | ||| | | ||| || ||| |||||| | Sbjct 2187053 AAGCACGAACGTGAGGTATAAAATGTCTCTCCTGG--GTTTCAGAGCTCCCCAGTGCTGG 2187110 Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 | || ||||| | ||| ||||| || ||||| ||||| |||||| Sbjct 2187111 ATATCTTTGGA----------------AAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTAC 2187154 Query 133438 ATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || ||| || || |||| |||||||| || | || || |||||||||| Sbjct 2187155 ATGTGCCAGATATCATGGTATTTGATGGGAAACATGATGAAGCGCTGGGGGTTTTC 2187210 >seq1345 Length=786133 Score = 183 bits (202), Expect = 3e-41 Identities = 415/624 (67%), Gaps = 34/624 (5%) Strand=Plus/Minus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 || |||| ||||||||||||| ||| |||||||| ||||| |||||||| || ||| Sbjct 220940 TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTG 220881 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || || || ||| || || | ||||||||| || || || || || ||||| ||||| Sbjct 220880 ATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATT 220821 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | || ||| || |||||||||| ||| || ||||| || || ||||| | | || Sbjct 220820 GATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCT 220761 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110 || | || || ||||| |||| ||| ||| Sbjct 220760 CCATATGTAGCCCCTTTGTCC-----CCAGTGCA-----------------------ACG 220729 Query 133111 CACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG 133170 || |||||| |||| || || || || | | | | |||| || |||| | | Sbjct 220728 CAAGGCATCTTTTCAATAGCATTGAAGAGAT--ACTCCCTCT-CCTTGGAAT-CTTTAAT 220673 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 ||||| || ||| |||||||| || |||| || || ||| | ||||| ||||| Sbjct 220672 GTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCA 220613 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 || || || || |||| || || |||||||| ||| | | |||| || || Sbjct 220612 TAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCA 220553 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||| |||| ||| || || || || || ||| | || || || | ||| | ||| Sbjct 220552 TTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGTATAACATGTCTCTCA 220493 Query 133351 TTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGT 133409 || |||| | ||| |||||| | | |||||||| |||||||||||||| | || Sbjct 220492 CTGGGTTTCA-GAGCTTCCCAGTACTGAATATCCTTGGAAAGGTCCACCTCCTCAGCCGT 220434 Query 133410 CCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAA 133469 |||||| || ||||| |||| |||||||| ||| || || |||| |||||||| Sbjct 220433 CCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATGGTATTTGATGGGAAA 220374 Query 133470 AATCACAAACCGGCGGGGGTTTTC 133493 || ||||| | | |||||||||| Sbjct 220373 GATGACAAAGCAGTGGGGGTTTTC 220350 >seq6 Length=12818899 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || |||||| ||| Sbjct 2580275 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAG 2580334 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||||||||| || ||| | ||||| Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCA 2580394 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 2580395 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2580454 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| | || || || Sbjct 2580455 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGGGGTGG 2580502 >seq31 Length=11202321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || |||||||| || ||| | ||||| ||||| ||||| | || ||||| Sbjct 8040083 AAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAGCGACTCATCTTTGCCGGCAAG 8040024 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||| || |||||||||||||| || || | || ||||| Sbjct 8040023 CAGCTGGAAGATGGGCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACCCTGCAC 8039964 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||| |||| || ||| Sbjct 8039963 CTGGTCCTCCGTCTGAGGGGTGGC 8039940 >seq309 Length=1536079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| ||||||||||| |||| || || || | Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || || ||||| | || || Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| || || |||||||| || | || || | || ||||| Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || |||||||| | || || ||| | ||| || Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 714819 >seq70 Length=7483708 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| |||||||| | || |||||| | Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || | || || | ||| Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||| || | || |||||||||||||| || | |||||| || || Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| || || | || |||| |||||||||| Sbjct 5585741 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCG 5585704 >seq37 Length=11501336 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || |||| ||||||||| | || || ||| | Sbjct 11476887 AAAATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGGTGGAGCCT 11476828 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| || ||||||| || | | | ||| Sbjct 11476827 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCATCCTCCCTGAC 11476768 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | ||||||| |||||||| || | ||||| || |||| Sbjct 11476767 CAGCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACT-- 11476710 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || | | || ||||| |||| || || |||| || ||| Sbjct 11476709 -ACATCCAGAAAGGGTCCACCCTGCACCTGGTCCTCTGTCTGAGGGGTGGC 11476660 >seq4 Length=18898765 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 38261 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCT 38320 ||| || || ||||| ||||||||| | || | ||| | | |||| | | | | | Sbjct 11612849 AACCCTGACTGGCAAGACCATCACCCTAGAGATGGAGCCTAGTGACACCATCGAGAATGT 11612790 Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGC 38380 || | || |||| || |||||||| || ||| | ||||| || | ||||||| || Sbjct 11612789 GAAGGCCAAGATCCAAGATAAAGAGGGCATCCCC-CTGACCAGTAGTGACTCATTT--GC 11612733 Query 38381 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGAC 38440 |||| |||||||| || ||||| || |||||||||||||| || || | || Sbjct 11612732 CAGCAAGCAGCTGGAAGATAGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCAC 11612673 Query 38441 GCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||| || ||| |||| || ||| Sbjct 11612672 CCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 11612642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499979476960640