Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq498 208 8e-49
seq1345 183 3e-41
seq6 127 2e-24
seq31 98.7 1e-15
seq309 82.4 8e-11
seq70 82.4 8e-11
seq37 82.4 8e-11
seq4 82.4 8e-11
>seq498
Length=2542268
Score = 208 bits (230), Expect = 8e-49
Identities = 516/776 (66%), Gaps = 33/776 (4%)
Strand=Plus/Plus
Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782
||||||||| ||||| ||||||||||| ||| ||| ||| || | || | ||
Sbjct 2186463 CAGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAG 2186522
Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842
||| |||| || || || || || ||||| || || |||| | | ||
Sbjct 2186523 CTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTAT 2186582
Query 132843 TTCCCTAACGCGC-GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901
||| | || | | || || | ||| || |||| ||||||||||||| ||| ||||
Sbjct 2186583 TTCTTTTACCCTCTGCTCCGAT-GGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 2186641
Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961
|||| || || ||||||||||| ||| || || || ||| || || | ||||||||
Sbjct 2186642 AGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 2186701
Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021
| || || | || |||||||| ||||| | | |||| || ||||||| ||| |
Sbjct 2186702 TCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTT 2186758
Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081
| ||||| || || || || | || || | | | || || |||||| ||||| |
Sbjct 2186759 CCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAAC 2186818
Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141
||| ||||| |||||||| | || || | ||||||||||| || || | || | |
Sbjct 2186819 GCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGA- 2186877
Query 133142 GGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199
| | |||| | || | | | ||||||||| || ||| |||||||| ||
Sbjct 2186878 -TACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGA 2186936
Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259
|||| ||| |||||||| ||||| ||||| || || || || ||||| || || ||
Sbjct 2186937 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAAC 2186996
Query 133260 TTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318
|||||| || ||| |||| ||| || || ||||| |||| ||| || || ||||| |
Sbjct 2186997 TTCTTG-GCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGA 2187052
Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGC 133377
| || | ||||| || ||||| | ||| | | ||| || ||| |||||| |
Sbjct 2187053 AAGCACGAACGTGAGGTATAAAATGTCTCTCCTGG--GTTTCAGAGCTCCCCAGTGCTGG 2187110
Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437
| || ||||| | ||| ||||| || ||||| ||||| ||||||
Sbjct 2187111 ATATCTTTGGA----------------AAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTAC 2187154
Query 133438 ATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| ||| || || |||| |||||||| || | || || ||||||||||
Sbjct 2187155 ATGTGCCAGATATCATGGTATTTGATGGGAAACATGATGAAGCGCTGGGGGTTTTC 2187210
>seq1345
Length=786133
Score = 183 bits (202), Expect = 3e-41
Identities = 415/624 (67%), Gaps = 34/624 (5%)
Strand=Plus/Minus
Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930
|| |||| ||||||||||||| ||| |||||||| ||||| |||||||| || |||
Sbjct 220940 TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTG 220881
Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990
|| || || ||| || || | ||||||||| || || || || || ||||| |||||
Sbjct 220880 ATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATT 220821
Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050
| || ||| || |||||||||| ||| || ||||| || || ||||| | | ||
Sbjct 220820 GATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCT 220761
Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG 133110
|| | || || ||||| |||| ||| |||
Sbjct 220760 CCATATGTAGCCCCTTTGTCC-----CCAGTGCA-----------------------ACG 220729
Query 133111 CACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG 133170
|| |||||| |||| || || || || | | | | |||| || |||| | |
Sbjct 220728 CAAGGCATCTTTTCAATAGCATTGAAGAGAT--ACTCCCTCT-CCTTGGAAT-CTTTAAT 220673
Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230
||||| || ||| |||||||| || |||| || || ||| | ||||| |||||
Sbjct 220672 GTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCA 220613
Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290
|| || || || |||| || || |||||||| ||| | | |||| || ||
Sbjct 220612 TAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCA 220553
Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350
||||| |||| ||| || || || || || ||| | || || || | ||| | |||
Sbjct 220552 TTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGTATAACATGTCTCTCA 220493
Query 133351 TTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGT 133409
|| |||| | ||| |||||| | | |||||||| |||||||||||||| | ||
Sbjct 220492 CTGGGTTTCA-GAGCTTCCCAGTACTGAATATCCTTGGAAAGGTCCACCTCCTCAGCCGT 220434
Query 133410 CCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAA 133469
|||||| || ||||| |||| |||||||| ||| || || |||| ||||||||
Sbjct 220433 CCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATGGTATTTGATGGGAAA 220374
Query 133470 AATCACAAACCGGCGGGGGTTTTC 133493
|| ||||| | | ||||||||||
Sbjct 220373 GATGACAAAGCAGTGGGGGTTTTC 220350
>seq6
Length=12818899
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| ||||| | || || || ||||||||| | || |||||| |||
Sbjct 2580275 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAG 2580334
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | ||| |||| ||||||||||| || ||| | |||||
Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCA 2580394
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | || ||||| |||||||| || | |||||||| ||||||||
Sbjct 2580395 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2580454
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | || ||||| |||| || ||| | || || ||
Sbjct 2580455 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGGGGTGG 2580502
>seq31
Length=11202321
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || |||||||| || ||| | ||||| ||||| ||||| | || |||||
Sbjct 8040083 AAGATCCAGGATAAAGAGGGCATCCCCCCAGACCAGCAGCGACTCATCTTTGCCGGCAAG 8040024
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | |||||| || |||||||||||||| || || | || |||||
Sbjct 8040023 CAGCTGGAAGATGGGCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACCCTGCAC 8039964
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||| |||| || |||
Sbjct 8039963 CTGGTCCTCCGTCTGAGGGGTGGC 8039940
>seq309
Length=1536079
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| ||||||||||| |||| || || || |
Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | || | || |||| || || || || ||||| | || ||
Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | ||| || || |||||||| || | || || | || |||||
Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| |||||||| | || || ||| | ||| ||
Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 714819
>seq70
Length=7483708
Score = 82.4 bits (90), Expect = 8e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || || |||||||| |||||||| | || |||||| |
Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||| || | || || | |||
Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||| ||| || | || |||||||||||||| || | |||||| || ||
Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| || || | || |||| ||||||||||
Sbjct 5585741 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCG 5585704
>seq37
Length=11501336
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/231 (68%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || || |||| ||||||||| | || || ||| |
Sbjct 11476887 AAAATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGGTGGAGCCT 11476828
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | | | | | || | || |||| || ||||||| || | | | |||
Sbjct 11476827 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCATCCTCCCTGAC 11476768
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || || ||||| | ||||||| |||||||| || | ||||| || ||||
Sbjct 11476767 CAGCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACT-- 11476710
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||| || | | || ||||| |||| || || |||| || |||
Sbjct 11476709 -ACATCCAGAAAGGGTCCACCCTGCACCTGGTCCTCTGTCTGAGGGGTGGC 11476660
>seq4
Length=18898765
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/211 (69%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 38261 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCT 38320
||| || || ||||| ||||||||| | || | ||| | | |||| | | | | |
Sbjct 11612849 AACCCTGACTGGCAAGACCATCACCCTAGAGATGGAGCCTAGTGACACCATCGAGAATGT 11612790
Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGC 38380
|| | || |||| || |||||||| || ||| | ||||| || | ||||||| ||
Sbjct 11612789 GAAGGCCAAGATCCAAGATAAAGAGGGCATCCCC-CTGACCAGTAGTGACTCATTT--GC 11612733
Query 38381 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGAC 38440
|||| |||||||| || ||||| || |||||||||||||| || || | ||
Sbjct 11612732 CAGCAAGCAGCTGGAAGATAGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCAC 11612673
Query 38441 GCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||| || ||| |||| || |||
Sbjct 11612672 CCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 11612642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499979476960640
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