Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq23 123 1e-22
seq309 109 2e-18
seq423 105 3e-17
seq155 100 1e-15
seq243 91.5 6e-13
seq38 91.5 6e-13
seq154 87.8 7e-12
seq97 87.8 7e-12
>seq23
Length=11062726
Score = 123 bits (136), Expect = 1e-22
Identities = 347/529 (66%), Gaps = 59/529 (11%)
Strand=Plus/Plus
Query 450915 CAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATG 450974
|| |||| ||||||||||| ||||||| || ||||| ||||| | ||| |||||||
Sbjct 4863370 CAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGTATGGAAAGC 4863429
Query 450975 TAGAAATTATAGCAAATGACCAAGGATCAC-GAACTACTCCTTCATGGGTAAGTTTTACG 451033
| || || || | ||||| | | ||| || ||| | || | ||||||
Sbjct 4863430 TGGAGATAATTGTCAATGAACCA----CACCGAGCTA-TGCTGC---------TTTTACT 4863475
Query 451034 GATTCAGAAAGACTT-TTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAA 451089
|| ||||| | | |||||| | ||||| || |||| | | || ||| |||
Sbjct 4863476 GACACAGAACAATTAATTAGGG-ATGCTGCGAAGAATCAGGTTGCAATGACAA---CCAC 4863531
Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149
|||||||| | |||||| ||| |||| || || || || |||||||| | ||| ||
Sbjct 4863532 CAACACAGTTTTTGATGCCAAATGTTTGATCGGATGTGGGTTTGATGATGCTGTTGTTCA 4863591
Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCA 451209
|| | | | |||||| || | | |||| | | ||
Sbjct 4863592 GTCAGTGG----------TGC--ATGATGCAG------------GCAGGCCCAAAGTCCA 4863627
Query 451210 AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCT 451269
|||| | || ||||| || || |||| ||| || || || | || |||||||||||
Sbjct 4863628 AGTAGAATACAAAGGAGAGACAAAAAGTTTCTACCCAGAGGAGGTGTCCTCTATGGTTCT 4863687
Query 451270 TACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329
|| || ||||| |||| |||||| ||| |||| | || |||| |
Sbjct 4863688 GACGAAGATGAAGGAAATTGCAGAAACCTATCTTGG----------AAAGA--CAGTTAC 4863735
Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389
||||| || ||||| ||||||||| | || || || ||||| |||||||| ||| |||
Sbjct 4863736 CACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTGGAACTAT 4863795
Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438
|||||| || ||||| |||| |||||| ||||| || || || | ||||
Sbjct 4863796 TGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCT 4863844
>seq309
Length=1536079
Score = 109 bits (120), Expect = 2e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || || ||||| || || || || |||||| | ||
Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || || || || ||||||||||| ||||||||||||||
Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || ||| | || || || || |||||||| | |||||| | || || |||
Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 714824
Score = 104 bits (114), Expect = 9e-17
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || || ||||| || || || || |||||| | ||
Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| ||| || || || || ||||||||||| ||||||||||||||
Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || || || |||||||| | ||||| || || |||
Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 713458
>seq423
Length=2413410
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || ||||| || || ||||| ||||| | ||
Sbjct 7287 ATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCA 7346
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| ||| | | || || || || | ||||||||||||||||||||||||
Sbjct 7347 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAG 7406
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | || ||| | || || || || |||||||| | |||||| | || || |||
Sbjct 7407 CAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 7466
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 7467 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 7504
>seq155
Length=3997344
Score = 100 bits (110), Expect = 1e-15
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || | ||||| || || || |||||||| | || || || ||||| |||||||
Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| ||| |||||| || | ||||| ||||||||||| |||||||| || || ||||||
Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479
Query 451440 TAGCATATGG 451449
| || |||||
Sbjct 782480 TTGCTTATGG 782489
>seq243
Length=1371817
Score = 91.5 bits (100), Expect = 6e-13
Identities = 169/245 (69%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | ||||||||||||||| || || || || ||| || | || | || |
Sbjct 795223 TGCAATCTCTGGCACTAGGGGATCATCTGGGTT-GGATCA--CATAGCAGTGAACAAATG 795279
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | | ||| |||||| | |
Sbjct 795280 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGA 795339
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | |||||||||||| |||||| ||| ||||| || |||
Sbjct 795340 CAAATGCTGCCATTACTGTTAATATTTGGATAATAAATTCTTGTTGTAAATGCAACCTTA 795399
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286
|| || || | || |||||| ||||||| |||| || |||||| ||||| | |
Sbjct 795400 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGA 795459
Query 96287 TAGGG 96291
|| ||
Sbjct 795460 TATGG 795464
>seq38
Length=12148825
Score = 91.5 bits (100), Expect = 6e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||||| ||||| || || || || | || ||||| || || || || |||||| | ||
Sbjct 10461224 ATGAAGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCG 10461165
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || | || || ||||||||||||||||||||||||||
Sbjct 10461164 GACACTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 10461105
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | | ||| | || || || || ||||||||| | |||||| | || || | |
Sbjct 10461104 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGT 10461045
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
||| | |||| | || |||||
Sbjct 10461044 ATTCAATAGGAGTCCACCCTTCA 10461022
>seq154
Length=6791889
Score = 87.8 bits (96), Expect = 7e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || || ||||| || | || || |||||| | ||
Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || || || || |||||| |||||||||||||||||||
Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | | ||| | || || || || |||||||| | |||||| | || || | |
Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | |||| | || ||||| | || || |||||
Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAGACT 1707856
>seq97
Length=4172328
Score = 87.8 bits (96), Expect = 7e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| ||||||||||| || || || |||| ||||||| |||||| | ||||||||||||
Sbjct 563127 GCCACTAAAGATGCTGGCCAGATATCTGGGCTAAATGTGCTTCGAGTGATTAATGAACCT 563186
Query 451427 ACAGCAGCTGCTCTAGCATATGGACT 451452
||||| |||||||| || ||||| ||
Sbjct 563187 ACAGCTGCTGCTCTGGCCTATGGTCT 563212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974935669145468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |