Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23 123 1e-22 seq309 109 2e-18 seq423 105 3e-17 seq155 100 1e-15 seq243 91.5 6e-13 seq38 91.5 6e-13 seq154 87.8 7e-12 seq97 87.8 7e-12 >seq23 Length=11062726 Score = 123 bits (136), Expect = 1e-22 Identities = 347/529 (66%), Gaps = 59/529 (11%) Strand=Plus/Plus Query 450915 CAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATG 450974 || |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 4863370 CAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGTATGGAAAGC 4863429 Query 450975 TAGAAATTATAGCAAATGACCAAGGATCAC-GAACTACTCCTTCATGGGTAAGTTTTACG 451033 | || || || | ||||| | | ||| || ||| | || | |||||| Sbjct 4863430 TGGAGATAATTGTCAATGAACCA----CACCGAGCTA-TGCTGC---------TTTTACT 4863475 Query 451034 GATTCAGAAAGACTT-TTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAA 451089 || ||||| | | |||||| | ||||| || |||| | | || ||| ||| Sbjct 4863476 GACACAGAACAATTAATTAGGG-ATGCTGCGAAGAATCAGGTTGCAATGACAA---CCAC 4863531 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||||||| | |||||| ||| |||| || || || || |||||||| | ||| || Sbjct 4863532 CAACACAGTTTTTGATGCCAAATGTTTGATCGGATGTGGGTTTGATGATGCTGTTGTTCA 4863591 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCA 451209 || | | | |||||| || | | |||| | | || Sbjct 4863592 GTCAGTGG----------TGC--ATGATGCAG------------GCAGGCCCAAAGTCCA 4863627 Query 451210 AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCT 451269 |||| | || ||||| || || |||| ||| || || || | || ||||||||||| Sbjct 4863628 AGTAGAATACAAAGGAGAGACAAAAAGTTTCTACCCAGAGGAGGTGTCCTCTATGGTTCT 4863687 Query 451270 TACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 || || ||||| |||| |||||| ||| |||| | || |||| | Sbjct 4863688 GACGAAGATGAAGGAAATTGCAGAAACCTATCTTGG----------AAAGA--CAGTTAC 4863735 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 ||||| || ||||| ||||||||| | || || || ||||| |||||||| ||| ||| Sbjct 4863736 CACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTGGAACTAT 4863795 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| || ||||| |||| |||||| ||||| || || || | |||| Sbjct 4863796 TGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCT 4863844 >seq309 Length=1536079 Score = 109 bits (120), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || || || || |||||| | || Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || ||||||||||| |||||||||||||| Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || || |||||||| | |||||| | || || ||| Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 714824 Score = 104 bits (114), Expect = 9e-17 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || || || || |||||| | || Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| ||| || || || || ||||||||||| |||||||||||||| Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || |||||||| | ||||| || || ||| Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 713458 >seq423 Length=2413410 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || || ||||| ||||| | || Sbjct 7287 ATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTCA 7346 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| ||| | | || || || || | |||||||||||||||||||||||| Sbjct 7347 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCAG 7406 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || ||| | || || || || |||||||| | |||||| | || || ||| Sbjct 7407 CAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 7466 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 7467 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 7504 >seq155 Length=3997344 Score = 100 bits (110), Expect = 1e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||| || || || |||||||| | || || || ||||| ||||||| Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| |||||| || | ||||| ||||||||||| |||||||| || || |||||| Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479 Query 451440 TAGCATATGG 451449 | || ||||| Sbjct 782480 TTGCTTATGG 782489 >seq243 Length=1371817 Score = 91.5 bits (100), Expect = 6e-13 Identities = 169/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | ||||||||||||||| || || || || ||| || | || | || | Sbjct 795223 TGCAATCTCTGGCACTAGGGGATCATCTGGGTT-GGATCA--CATAGCAGTGAACAAATG 795279 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 795280 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGA 795339 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | |||||||||||| |||||| ||| ||||| || ||| Sbjct 795340 CAAATGCTGCCATTACTGTTAATATTTGGATAATAAATTCTTGTTGTAAATGCAACCTTA 795399 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| ||||| | | Sbjct 795400 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGA 795459 Query 96287 TAGGG 96291 || || Sbjct 795460 TATGG 795464 >seq38 Length=12148825 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||||| ||||| || || || || | || ||||| || || || || |||||| | || Sbjct 10461224 ATGAAGATTTTTGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCTTCG 10461165 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || | || || |||||||||||||||||||||||||| Sbjct 10461164 GACACTATAGAAAATGTAAAGGCCCAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 10461105 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | | ||| | || || || || ||||||||| | |||||| | || || | | Sbjct 10461104 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAGT 10461045 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | |||| | || ||||| Sbjct 10461044 ATTCAATAGGAGTCCACCCTTCA 10461022 >seq154 Length=6791889 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || | || || |||||| | || Sbjct 1707639 ATGCAGATATTCGTGAAGACCCTCACGGGGAAAACCATCATGCTCGAGGTTGAACCCTCG 1707698 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || |||||| ||||||||||||||||||| Sbjct 1707699 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATCAG 1707758 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | | ||| | || || || || |||||||| | |||||| | || || | | Sbjct 1707759 CAGAGGCTGAGCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGT 1707818 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | |||| | || ||||| | || || ||||| Sbjct 1707819 ATTCAATAGGAGTCCACCCTTCATCTTGTGTTGAGACT 1707856 >seq97 Length=4172328 Score = 87.8 bits (96), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| || || || |||| ||||||| |||||| | |||||||||||| Sbjct 563127 GCCACTAAAGATGCTGGCCAGATATCTGGGCTAAATGTGCTTCGAGTGATTAATGAACCT 563186 Query 451427 ACAGCAGCTGCTCTAGCATATGGACT 451452 ||||| |||||||| || ||||| || Sbjct 563187 ACAGCTGCTGCTCTGGCCTATGGTCT 563212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974935669145468