Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq23 131 1e-24
seq908 111 1e-18
seq37 107 1e-17
seq155 102 6e-16
seq382 93.3 3e-13
>seq23
Length=11062726
Score = 131 bits (144), Expect = 1e-24
Identities = 423/648 (65%), Gaps = 8/648 (1%)
Strand=Plus/Minus
Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570
|| ||||| | |||||| || |||||||||||||| | || | | || |||| ||
Sbjct 4865093 GCAGTTTCAATACCAAGGGAGAGAGGAGTGACATCCAAGAGCATCAAATCCTGAACATTC 4865034
Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
||| | | ||| ||||| || || || | ||| |||||||| ||||||||||||
Sbjct 4865033 TCAGACTTGTCTCCAGATAGAATGGCGGCCTGGACAGCTGCACCATAAGCAACAGCTTCA 4864974
Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690
||||| |||| | | ||| |||| ||| ||| ||||||| | | ||||| | |||
Sbjct 4864973 TCAGGGTTAATGCTCTTATTCAGTTCTTTTCCACTGAAAAAGTCTTGCAGAAGCT-TCTG 4864915
Query 517691 A-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749
| ||| || || | | || || || || | ||||| ||||| | |||||| || ||
Sbjct 4864914 AGTCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATGTCATGGATCTGTGACTTGTC 4864855
Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809
||||| | ||| | | ||||| || || || ||| || |||| ||| |
Sbjct 4864854 TAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAGAGTGCCTTGGAACAGGTCAGC 4864795
Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAA 517869
| | |||||| ||| ||| |||| | | || | || ||||| || | |
Sbjct 4864794 ATTTAATTCTTCAAATCGAGCATGGGTAATGGAGGTATAGAAGTCGATTCCCTCATAGAG 4864735
Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929
|||||||| ||||| | | || || || || |||| | | |||| ||||||||
Sbjct 4864734 AGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGTGTATGCTTAGTCCGTTCACA 4864675
Query 517930 TGCTGTCCTTAGTCTTC-GTAAG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTT 517987
|| || | || | | | || || || || | ||| | || | || | |||
Sbjct 4864674 GGCAGTACGCAGACACCTGACAGCTCTCTTCCT--CTCATTGATGTCCTTCTTGTGCTTT 4864617
Query 517988 CTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046
| ||| || || ||| | | || | || | || |||||||| ||||| || |||||
Sbjct 4864616 CGCTTAAACTCAGCAATGAAATGAT-TGACCATTCGGTTATCAAAGTCTTCTCCACCCAA 4864558
Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106
| || | ||| | || | | | |||| |||| |||||| ||| || | | |
Sbjct 4864557 GTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCCATCCTCAGTAGTGAGGATTGA 4864498
Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154
|||||| ||| ||||| |||| |||||| | || |||||| ||||
Sbjct 4864497 CACATCAAAGGTACCACCTCCCAAGTCAAAAGTCAGCACATTCCTTTC 4864450
>seq908
Length=515378
Score = 111 bits (122), Expect = 1e-18
Identities = 322/493 (65%), Gaps = 2/493 (0%)
Strand=Plus/Minus
Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226
|||||| | ||||| |||| ||||| || || || ||||| || ||||||| |||||
Sbjct 360030 TTTATCCAAGCCATAGGCAATGGCAGCTGCCGTCGGCTCATTGATGATTCTCAGCACATT 359971
Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286
|| || || || ||||||||||| ||||| || | ||| || ||||| ||||| ||
Sbjct 359970 GAGTCCTGCGATGACACCTGCATCTTTGGTGGCCTGGCGTTGAGAGTCGTTGAAATAGGC 359911
Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346
|| || || || || |||| || || | || | | |||| ||| || | ||
Sbjct 359910 CGGCACCGTGATCACAGCATTGGTGACACTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTT 359851
Query 518347 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTTT 518405
||| || | | | ||| || || || | || |||| | | |||| | ||| ||
Sbjct 359850 CATCTTGGTCAGCACCATGGAGGAGATCTCCTC-GGGGTAGAAGGCTTTCTTCTCACCTT 359792
Query 518406 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATT 518465
|| || || | | || || || | ||||| |||| ||||||||| |
Sbjct 359791 TGTAGGACACCAGCACCTTGGGCTTGCCCCCTTCGTTAATGACTTGAAATGGCCAAAGCT 359732
Query 518466 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 518525
|||| || || || || | || ||||| | || ||||||| ||||| |||||||
Sbjct 359731 TCATGTCCGACTGCACCACCGGATCGTTAAACTTCCTGCCAATTAGACGTTTGGCATCAA 359672
Query 518526 AAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 518585
||| ||| || || || || || | || | ||||| ||||| || || || | |
Sbjct 359671 AAACAGTGTTCTGGGGGTTCATGGCCACCTGGTTCTTGGCCGCATCCCCGATGAGCCGCT 359612
Query 518586 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 518645
| || || || || | || || || || ||||| || || || || || || || |
Sbjct 359611 CAGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGA 359552
Query 518646 TTTCAACTTTACC 518658
| || || || ||
Sbjct 359551 TCTCCACCTTGCC 359539
>seq37
Length=11501336
Score = 107 bits (118), Expect = 1e-17
Identities = 100/127 (79%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| ||||| || ||||| ||||| ||||| ||||||||| | || || | |||||
Sbjct 4239870 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 4239811
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| ||||| ||| | || ||| ||||| || |||||||||||||| || ||
Sbjct 4239810 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 4239751
Query 367113 TGATGGA 367119
|||||||
Sbjct 4239750 TGATGGA 4239744
>seq155
Length=3997344
Score = 102 bits (112), Expect = 6e-16
Identities = 358/552 (65%), Gaps = 14/552 (3%)
Strand=Plus/Minus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|||||||| |||||||||||||| || |||| | | ||| |||| ||| ||||||||
Sbjct 783142 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAG 783083
Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|| | | ||||| | ||| | ||| || || | | || || || || | |||||
Sbjct 783082 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAAT 783024
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788
||||| | |||||| || || ||||| | ||| | | ||||| || || || ||
Sbjct 783023 GTCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAG 782964
Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848
| ||| |||| ||| | | | |||||| ||| ||| | |||| | | ||
Sbjct 782963 AGTGCCTCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 782904
Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908
| || ||||| || | | |||||||| ||||| | | || || || || ||
Sbjct 782903 GAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 782844
Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 517964
| ||| ||||| |||||||| || || | || | | | || ||| | || | |
Sbjct 782843 GGTACGCTTAGCCCGTTCACAGGCAGTACGCAGACGCCTGACAGCTCTCTTGTTCTCACT 782784
Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022
||| || | || | || | ||| || || ||| | ||| | || | ||
Sbjct 782783 GAT----GTCCTTCTTGTGCTTCCGCTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 782730
Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082
|||||||| ||||| || ||||| | || | ||| | || | | | || | ||||
Sbjct 782729 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAAT 782670
Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142
|||||| |||| || | | | |||||| || ||||| |||| |||||||| ||
Sbjct 782669 TCCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 782610
Query 518143 TACATTCATTTC 518154
|||||| ||||
Sbjct 782609 CACATTCCTTTC 782598
Score = 98.7 bits (108), Expect = 8e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| ||||| | ||||| |||| ||||||||| ||||||||||| ||||||| | |||
Sbjct 782501 TTCTTATCTAACCCATAAGCAATAGCAGCAGCGGTTGGTTCATTGATAATTCGAAGCACA 782442
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || || ||||| |||| |||||||| || || |||| || || || || || ||
Sbjct 782441 TTGAGGCCGGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAG 782382
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || ||||| | || ||||
Sbjct 782381 GCTGGCACAGTGACCACAGCAT 782360
>seq382
Length=2564230
Score = 93.3 bits (102), Expect = 3e-13
Identities = 133/186 (72%), Gaps = 6/186 (3%)
Strand=Plus/Minus
Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 517269
||| |||||||| || || || ||||||| || ||| || | || ||||||
Sbjct 1848769 ATTGGTAATAGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCCGTCACACG 1848713
Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329
|||||||||||| |||| | || || ||||||||||| || || ||||| | ||||
Sbjct 1848712 AAGAATACCATTAACATCTATCTCGAAGGTGACTTCAATCTGGGGCACCCCACGGGGAGC 1848653
Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389
||| || || || || || |||||| |||||| || || ||||| |||| |||
Sbjct 1848652 AGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTTTGTGAGGGGTCG 1848593
Query 517390 TTCACC 517395
||||||
Sbjct 1848592 TTCACC 1848587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779287998126226
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