Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23 131 1e-24 seq908 111 1e-18 seq37 107 1e-17 seq155 102 6e-16 seq382 93.3 3e-13 >seq23 Length=11062726 Score = 131 bits (144), Expect = 1e-24 Identities = 423/648 (65%), Gaps = 8/648 (1%) Strand=Plus/Minus Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 || ||||| | |||||| || |||||||||||||| | || | | || |||| || Sbjct 4865093 GCAGTTTCAATACCAAGGGAGAGAGGAGTGACATCCAAGAGCATCAAATCCTGAACATTC 4865034 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 ||| | | ||| ||||| || || || | ||| |||||||| |||||||||||| Sbjct 4865033 TCAGACTTGTCTCCAGATAGAATGGCGGCCTGGACAGCTGCACCATAAGCAACAGCTTCA 4864974 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 517690 ||||| |||| | | ||| |||| ||| ||| ||||||| | | ||||| | ||| Sbjct 4864973 TCAGGGTTAATGCTCTTATTCAGTTCTTTTCCACTGAAAAAGTCTTGCAGAAGCT-TCTG 4864915 Query 517691 A-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | ||| || || | | || || || || | ||||| ||||| | |||||| || || Sbjct 4864914 AGTCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATGTCATGGATCTGTGACTTGTC 4864855 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGA 517809 ||||| | ||| | | ||||| || || || ||| || |||| ||| | Sbjct 4864854 TAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAGAGTGCCTTGGAACAGGTCAGC 4864795 Query 517810 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAA 517869 | | |||||| ||| ||| |||| | | || | || ||||| || | | Sbjct 4864794 ATTTAATTCTTCAAATCGAGCATGGGTAATGGAGGTATAGAAGTCGATTCCCTCATAGAG 4864735 Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 |||||||| ||||| | | || || || || |||| | | |||| |||||||| Sbjct 4864734 AGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGTGTATGCTTAGTCCGTTCACA 4864675 Query 517930 TGCTGTCCTTAGTCTTC-GTAAG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTT 517987 || || | || | | | || || || || | ||| | || | || | ||| Sbjct 4864674 GGCAGTACGCAGACACCTGACAGCTCTCTTCCT--CTCATTGATGTCCTTCTTGTGCTTT 4864617 Query 517988 CTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 | ||| || || ||| | | || | || | || |||||||| ||||| || ||||| Sbjct 4864616 CGCTTAAACTCAGCAATGAAATGAT-TGACCATTCGGTTATCAAAGTCTTCTCCACCCAA 4864558 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | || | ||| | || | | | |||| |||| |||||| ||| || | | | Sbjct 4864557 GTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCCATCCTCAGTAGTGAGGATTGA 4864498 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 |||||| ||| ||||| |||| |||||| | || |||||| |||| Sbjct 4864497 CACATCAAAGGTACCACCTCCCAAGTCAAAAGTCAGCACATTCCTTTC 4864450 >seq908 Length=515378 Score = 111 bits (122), Expect = 1e-18 Identities = 322/493 (65%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | ||||| |||| ||||| || || || ||||| || ||||||| ||||| Sbjct 360030 TTTATCCAAGCCATAGGCAATGGCAGCTGCCGTCGGCTCATTGATGATTCTCAGCACATT 359971 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || || || || ||||||||||| ||||| || | ||| || ||||| ||||| || Sbjct 359970 GAGTCCTGCGATGACACCTGCATCTTTGGTGGCCTGGCGTTGAGAGTCGTTGAAATAGGC 359911 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTT 518346 || || || || || |||| || || | || | | |||| ||| || | || Sbjct 359910 CGGCACCGTGATCACAGCATTGGTGACACTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTT 359851 Query 518347 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTTT 518405 ||| || | | | ||| || || || | || |||| | | |||| | ||| || Sbjct 359850 CATCTTGGTCAGCACCATGGAGGAGATCTCCTC-GGGGTAGAAGGCTTTCTTCTCACCTT 359792 Query 518406 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATT 518465 || || || | | || || || | ||||| |||| ||||||||| | Sbjct 359791 TGTAGGACACCAGCACCTTGGGCTTGCCCCCTTCGTTAATGACTTGAAATGGCCAAAGCT 359732 Query 518466 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 518525 |||| || || || || | || ||||| | || ||||||| ||||| ||||||| Sbjct 359731 TCATGTCCGACTGCACCACCGGATCGTTAAACTTCCTGCCAATTAGACGTTTGGCATCAA 359672 Query 518526 AAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 518585 ||| ||| || || || || || | || | ||||| ||||| || || || | | Sbjct 359671 AAACAGTGTTCTGGGGGTTCATGGCCACCTGGTTCTTGGCCGCATCCCCGATGAGCCGCT 359612 Query 518586 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 518645 | || || || || | || || || || ||||| || || || || || || || | Sbjct 359611 CAGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGA 359552 Query 518646 TTTCAACTTTACC 518658 | || || || || Sbjct 359551 TCTCCACCTTGCC 359539 >seq37 Length=11501336 Score = 107 bits (118), Expect = 1e-17 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 4239870 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 4239811 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 4239810 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 4239751 Query 367113 TGATGGA 367119 ||||||| Sbjct 4239750 TGATGGA 4239744 >seq155 Length=3997344 Score = 102 bits (112), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||||||||| || |||| | | ||| |||| ||| |||||||| Sbjct 783142 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAG 783083 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | | ||||| | ||| | ||| || || | | || || || || | ||||| Sbjct 783082 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAAT 783024 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | |||||| || || ||||| | ||| | | ||||| || || || || Sbjct 783023 GTCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAG 782964 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | ||| |||| ||| | | | |||||| ||| ||| | |||| | | || Sbjct 782963 AGTGCCTCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 782904 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || ||||| || | | |||||||| ||||| | | || || || || || Sbjct 782903 GAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 782844 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 517964 | ||| ||||| |||||||| || || | || | | | || ||| | || | | Sbjct 782843 GGTACGCTTAGCCCGTTCACAGGCAGTACGCAGACGCCTGACAGCTCTCTTGTTCTCACT 782784 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| || | || | || | ||| || || ||| | ||| | || | || Sbjct 782783 GAT----GTCCTTCTTGTGCTTCCGCTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 782730 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||| ||||| || ||||| | || | ||| | || | | | || | |||| Sbjct 782729 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAAT 782670 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||| |||| || | | | |||||| || ||||| |||| |||||||| || Sbjct 782669 TCCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 782610 Query 518143 TACATTCATTTC 518154 |||||| |||| Sbjct 782609 CACATTCCTTTC 782598 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||||||| ||||||||||| ||||||| | ||| Sbjct 782501 TTCTTATCTAACCCATAAGCAATAGCAGCAGCGGTTGGTTCATTGATAATTCGAAGCACA 782442 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| || || |||| || || || || || || Sbjct 782441 TTGAGGCCGGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAG 782382 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | || |||| Sbjct 782381 GCTGGCACAGTGACCACAGCAT 782360 >seq382 Length=2564230 Score = 93.3 bits (102), Expect = 3e-13 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 517269 ||| |||||||| || || || ||||||| || ||| || | || |||||| Sbjct 1848769 ATTGGTAATAGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCCGTCACACG 1848713 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 |||||||||||| |||| | || || ||||||||||| || || ||||| | |||| Sbjct 1848712 AAGAATACCATTAACATCTATCTCGAAGGTGACTTCAATCTGGGGCACCCCACGGGGAGC 1848653 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || || || |||||| |||||| || || ||||| |||| ||| Sbjct 1848652 AGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTTTGTGAGGGGTCG 1848593 Query 517390 TTCACC 517395 |||||| Sbjct 1848592 TTCACC 1848587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779287998126226