Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq387 96.9 4e-15
seq644 95.1 1e-14
seq571 93.3 5e-14
seq31 93.3 5e-14
seq425 82.4 9e-11
>seq387
Length=3314187
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 260734 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 260793
Query 136777 GGGAACAGCTTTT 136789
|| ||| ||||
Sbjct 260794 CGGGCCAGTTTTT 260806
Score = 95.1 bits (104), Expect = 1e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 92723 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 92664
Query 136777 GGGAACAGCT 136786
|| |||||
Sbjct 92663 CGGGCCAGCT 92654
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 277295 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 277353
>seq644
Length=862561
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 643899 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 643958
Query 136777 GGGAACAGCTTT 136788
|| |||| ||
Sbjct 643959 CGGGCCAGCCTT 643970
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 689327 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 689269
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 689771 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 689713
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 736182 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 736240
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 757286 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 757344
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 760295 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 760353
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 760740 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 760798
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 740970 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTTGCGGGTTCGATCCCCGT 741028
>seq571
Length=1551436
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1223448 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1223506
>seq31
Length=11202321
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1369886 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1369944
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||
Sbjct 1389948 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGCGGGTTCGATCCCCGT 1389890
>seq425
Length=3094096
Score = 82.4 bits (90), Expect = 9e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG 136774
||||||||||||||||||||||||||| |||||||||||||| | ||||| | |||||
Sbjct 401364 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCAATCCCCG 401421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588748353413800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |