Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq309 141 2e-28 seq6 138 3e-27 seq423 132 1e-25 seq154 118 2e-21 seq38 116 8e-21 seq31 113 1e-19 seq366 98.7 2e-15 seq70 98.7 2e-15 seq4 96.9 8e-15 seq3 96.9 8e-15 seq319 89.7 1e-12 >seq309 Length=1536079 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||||||||| || | | ||| | Sbjct 714824 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 714765 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||||| || | || || || |||||||| ||||| Sbjct 714764 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCC 714705 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 714704 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 714645 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | ||||| Sbjct 714644 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 131 bits (144), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||||||||| || | ||| | Sbjct 713458 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGA 713403 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| || | ||| || || |||||||| ||||| Sbjct 713402 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCC 713343 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| | || || || |||||||| ||| || || || || Sbjct 713342 TTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 713283 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | ||||| Sbjct 713282 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq6 Length=12818899 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | || || | |||||||| Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || || || |||||||| || Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| ||||| |||||||| ||| || || || ||||| | ||| Sbjct 2580364 ATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCTAGGGTGATGGTC 2580308 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || ||||| ||||| | |||||| Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq423 Length=2413410 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||||||||| || | | ||| | Sbjct 7504 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 7445 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| | |||||| | | || || || |||||||| ||||| Sbjct 7444 CCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCC 7385 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || | || || || ||| || || || |||||||| || ||| | ||||| || Sbjct 7384 TTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTG 7325 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | || || ||||| | ||||| Sbjct 7324 ATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287 >seq154 Length=6791889 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| | ||||||| |||| || | | ||| | Sbjct 1707856 AGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGG 1707797 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||| | || | || || || |||||||| |||| Sbjct 1707796 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGC 1707737 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || | Sbjct 1707736 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATG 1707677 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | ||||| Sbjct 1707676 ATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq38 Length=12148825 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||| | ||||| ||||| |||||||| | ||||||| |||| || | | ||| | Sbjct 10461007 AGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGT 10461066 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||| | || | || || || |||||||| ||||| Sbjct 10461067 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 10461126 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || | ||| || || || || ||||||||| ||| || || || || Sbjct 10461127 TTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGT 10461185 >seq31 Length=11202321 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | |||||| | ||||||||| Sbjct 8039959 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 8040018 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 8040019 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGG 8040078 Query 195052 ATTTT 195056 || || Sbjct 8040079 ATCTT 8040083 >seq366 Length=4409749 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||| ||||||| || || ||||| || | || || ||||| || Sbjct 1116225 ACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATCCTCC 1116284 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || |||||||| || |||||||| || ||||| Sbjct 1116285 AGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 1116344 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||| |||||||||||||| Sbjct 1116345 ATCTTGGCCTTGACATTCTCAATGGTGTC 1116373 >seq70 Length=7483708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || || ||||| | || || | ||| || Sbjct 5585710 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATCCTCC 5585769 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || || || || |||||||| || ||| |||| |||||||| Sbjct 5585770 AGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTTGG 5585829 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| | || || ||||| || | ||||| Sbjct 5585830 ATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTG 5585889 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 5585890 CCCGTCAGGGTCTTCACAAAGATCTGCAT 5585918 >seq4 Length=18898765 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | |||||| | | |||||| Sbjct 11612661 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCTTCC 11612720 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||| | | || |||| | ||||| || || ||||| ||||| ||||| Sbjct 11612721 AGCTGCTT-GCTG-GCAAATGAGTCACTACTGGTCAGG-GGGATGCCCTCTTTATCTTGG 11612777 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| |||||||| | |||| || ||||| | ||||| Sbjct 11612778 ATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTCTTG 11612837 Query 195112 CCTGTCA 195118 || |||| Sbjct 11612838 CCAGTCA 11612844 >seq3 Length=5748141 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | || || | ||||| | Sbjct 3927314 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCACCC 3927373 Query 194992 AGCTGCTTACCTGCGAA-GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| | || || || || | || |||||||| || |||||||| || ||||| Sbjct 3927374 AGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTG 3927433 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| ||||| |||||||| | || || || || || | |||| Sbjct 3927434 GATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTCTT 3927493 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| || || || || | ||||| Sbjct 3927494 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523 >seq319 Length=3946259 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC--TCCCATCTTCGA 194992 ||||| | ||||||||||| || || ||||| || | | ||| | |||||||| | Sbjct 689850 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG--ACAGTACATAGCCATCTTCCA 689907 Query 194993 GCTGCTTACCTG-CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||| || |||| | || || |||| ||||||| || || |||||||| |||||||| Sbjct 689908 GCTG-TTTCCTGACAAATATCAGTCTCTGTTGGTGAGGTGGGATGCCTTCCTTGTCTTGG 689966 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||| |||||||| ||||| Sbjct 689967 ATCTTAGTCTTGACATTCTCAATAGTGTC 689995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109042050780407