Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq309 141 2e-28
seq6 138 3e-27
seq423 132 1e-25
seq154 118 2e-21
seq38 116 8e-21
seq31 113 1e-19
seq366 98.7 2e-15
seq70 98.7 2e-15
seq4 96.9 8e-15
seq3 96.9 8e-15
seq319 89.7 1e-12
>seq309
Length=1536079
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| |||||||||||||| || | | ||| |
Sbjct 714824 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 714765
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| |||||||| || | || || || |||||||| |||||
Sbjct 714764 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCC 714705
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || |||||||| ||| || || || ||
Sbjct 714704 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 714645
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | || || ||||| | |||||
Sbjct 714644 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 131 bits (144), Expect = 4e-25
Identities = 160/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| |||||||||||||| || | ||| |
Sbjct 713458 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC----AAAGTACGA 713403
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| || ||||| || | ||| || || |||||||| |||||
Sbjct 713402 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCC 713343
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| | || || || |||||||| ||| || || || ||
Sbjct 713342 TTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTG 713283
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | || || ||||| | |||||
Sbjct 713282 ATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq6
Length=12818899
Score = 138 bits (152), Expect = 3e-27
Identities = 159/213 (75%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| |||||||||||||| || || ||||| || | || || | ||||||||
Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| || | || ||||| || || || || |||||||| ||
Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| ||| |||||| ||||| |||||||| ||| || || || ||||| | |||
Sbjct 2580364 ATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCTAGGGTGATGGTC 2580308
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || || || ||||| ||||| | ||||||
Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq423
Length=2413410
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| |||||||||||||| || | | ||| |
Sbjct 7504 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGG 7445
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| | |||||| | | || || || |||||||| |||||
Sbjct 7444 CCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCC 7385
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| | || || || ||| || || || |||||||| || ||| | ||||| ||
Sbjct 7384 TTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTG 7325
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | || || ||||| | |||||
Sbjct 7324 ATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287
>seq154
Length=6791889
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| | ||||||| |||| || | | ||| |
Sbjct 1707856 AGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGG 1707797
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| |||||| | || | || || || |||||||| ||||
Sbjct 1707796 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGC 1707737
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || |||||||| ||| || || || |
Sbjct 1707736 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATG 1707677
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | || || ||||| | |||||
Sbjct 1707676 ATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq38
Length=12148825
Score = 116 bits (128), Expect = 8e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||| | ||||| ||||| |||||||| | ||||||| |||| || | | ||| |
Sbjct 10461007 AGTCTCGACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGT 10461066
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| |||||| | || | || || || |||||||| |||||
Sbjct 10461067 CCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 10461126
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || || || | ||| || || || || ||||||||| ||| || || || ||
Sbjct 10461127 TTATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGT 10461185
>seq31
Length=11202321
Score = 113 bits (124), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || || ||||| || | |||||| | |||||||||
Sbjct 8039959 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCC 8040018
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| ||||| || |||||||| || ||||| ||||| || ||
Sbjct 8040019 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCTTTATCCTGG 8040078
Query 195052 ATTTT 195056
|| ||
Sbjct 8040079 ATCTT 8040083
>seq366
Length=4409749
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| | ||| ||||||| || || ||||| || | || || ||||| ||
Sbjct 1116225 ACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATCCTCC 1116284
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || | || |||||||| || |||||||| || |||||
Sbjct 1116285 AGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 1116344
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || |||||| ||||||||||||||
Sbjct 1116345 ATCTTGGCCTTGACATTCTCAATGGTGTC 1116373
>seq70
Length=7483708
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| | ||||||||||| || || || ||||| | || || | ||| ||
Sbjct 5585710 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATCCTCC 5585769
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || || || || || |||||||| || ||| |||| ||||||||
Sbjct 5585770 AGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTTGG 5585829
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| |||||||||||||| | || || ||||| || | |||||
Sbjct 5585830 ATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTG 5585889
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || || || | |||||
Sbjct 5585890 CCCGTCAGGGTCTTCACAAAGATCTGCAT 5585918
>seq4
Length=18898765
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/187 (73%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || || ||||| || | |||||| | | ||||||
Sbjct 11612661 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCTATCTTCC 11612720
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||| | | || |||| | ||||| || || ||||| ||||| |||||
Sbjct 11612721 AGCTGCTT-GCTG-GCAAATGAGTCACTACTGGTCAGG-GGGATGCCCTCTTTATCTTGG 11612777
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || ||||| |||||||| | |||| || ||||| | |||||
Sbjct 11612778 ATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCTCTAGGGTGATGGTCTTG 11612837
Query 195112 CCTGTCA 195118
|| ||||
Sbjct 11612838 CCAGTCA 11612844
>seq3
Length=5748141
Score = 96.9 bits (106), Expect = 8e-15
Identities = 148/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || || ||||| || | || || | ||||| |
Sbjct 3927314 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCACCC 3927373
Query 194992 AGCTGCTTACCTGCGAA-GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| | || || || || | || |||||||| || |||||||| || |||||
Sbjct 3927374 AGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTG 3927433
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || |||||| ||||| |||||||| | || || || || || | ||||
Sbjct 3927434 GATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTCTT 3927493
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| || || || || | |||||
Sbjct 3927494 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523
>seq319
Length=3946259
Score = 89.7 bits (98), Expect = 1e-12
Identities = 112/149 (75%), Gaps = 6/149 (4%)
Strand=Plus/Plus
Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC--TCCCATCTTCGA 194992
||||| | ||||||||||| || || ||||| || | | ||| | |||||||| |
Sbjct 689850 AGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG--ACAGTACATAGCCATCTTCCA 689907
Query 194993 GCTGCTTACCTG-CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||| || |||| | || || |||| ||||||| || || |||||||| ||||||||
Sbjct 689908 GCTG-TTTCCTGACAAATATCAGTCTCTGTTGGTGAGGTGGGATGCCTTCCTTGTCTTGG 689966
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || |||||| |||||||| |||||
Sbjct 689967 ATCTTAGTCTTGACATTCTCAATAGTGTC 689995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109042050780407
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |