Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq70 96.9 2e-15 seq6 96.9 2e-15 seq3 95.1 8e-15 seq366 84.2 1e-11 seq31 84.2 1e-11 >seq70 Length=7483708 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || ||| | | ||| ||| Sbjct 5585710 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATCCTCC 5585769 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||||||| || ||||||||| | || | | |||||||| Sbjct 5585770 AGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTTGG 5585829 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| | ||| || || | || ||||| | Sbjct 5585830 ATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCT 5585887 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || |||||||||||||||||||| || Sbjct 5585888 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 5585921 >seq6 Length=12818899 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||| ||||| Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 2580364 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCT 2580307 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | || ||||| ||||||||||| Sbjct 2580306 TACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq3 Length=5748141 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || ||||| || Sbjct 3927314 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCACCC 3927373 Query 34833 AGCTGTTTTCCGGCAAAT-ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || | ||||||| || || | ||||||||| | || | || ||||| || Sbjct 3927374 AGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTG 3927433 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | |||| | ||| || || | || ||| | Sbjct 3927434 GATCTTGACCTTGAC--ATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTC 3927491 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || || |||||||||||||||||||| || Sbjct 3927492 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 3927526 >seq366 Length=4409749 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||||||| ||| | | |||| ||| Sbjct 1116225 ACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATCCTCC 1116284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| |||||||||||||| || | ||||||||| | || | || ||||| || Sbjct 1116285 AGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATC 1116340 >seq31 Length=11202321 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||||||| || || ||||| || ||||| |||||||| | || | ||||| | Sbjct 8040984 CATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTT 8041043 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGT 34942 | || ||||| ||||| || || || | |||| || ||| || || | ||| Sbjct 8041044 TATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGT 8041101 Query 34943 TATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || || || || |||||||| ||||||||||| || Sbjct 8041102 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 8041143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324511261929288