Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 289 3e-73
seq498 228 9e-55
seq657 102 9e-17
seq78 100 3e-16
seq184 93.3 5e-14
>seq1345
Length=786133
Score = 289 bits (320), Expect = 3e-73
Identities = 632/939 (67%), Gaps = 48/939 (5%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTA---CTCCCAT 18668
||| |||||| |||||| | ||||||||||||| | |||||| || | |||||
Sbjct 221261 TTAGAAATCAGTATCCAAGGTAAAAGAATTCTCTG---TTGAATTCGATATCGCCCCCAT 221205
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| | || ||| | ||| || |||||||| || || |||| |||| ||| |||
Sbjct 221204 T----GGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATT 221149
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||| || ||||||| ||||| ||| || | || || || || || | || | |
Sbjct 221148 TTCCATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCAT 221089
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
|| || ||| | ||||||| ||| || ||||||| || | ||||| || || |
Sbjct 221088 CAGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAG 221029
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
|| ||||| | || || || || || || || ||||| | | || | | ||| | |
Sbjct 221028 CTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCAT-TCATA-ATT 220971
Query 18909 AGAT-ACA-ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966
| | || ||||| | || | || || || || || || ||||||| || |||
Sbjct 220970 ATTTTACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCA 220911
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|| |||||||||| ||||| ||||| || || | ||||| |||||||| | || |||
Sbjct 220910 AAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGC 220851
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086
|| ||||| | || || | ||||||||| || ||||| || ||||||||||| || |||
Sbjct 220850 ATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCT 220791
Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146
|| || || ||||| || || | | ||||||||| |||| || |
Sbjct 220790 TCCACGGCGGCAAAGGCCACAACACATTCTCCATATGTAGC---------------CCCT 220746
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
|| || |||| | || || || ||||| | || |||| ||| || |||
Sbjct 220745 TT--GTCCCCAGT--GCA---------ACGCAAGGCATCTTTTCAATAGCATTGAAGAGA 220699
Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266
||| | ||| | | |||||||| || || || | | |||||||||||| |||
Sbjct 220698 TACTCCCTCTCCTTGGAATCTTTAA----TGTGTCAATAAGGAGACTGTACATTTCAGAA 220643
Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326
|| ||||||||||| | || || || || || ||||| | | ||||| | || |||
Sbjct 220642 TGTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACT 220583
Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386
|| | ||| || ||||| || ||||| ||||| | ||||| |||||||| ||
Sbjct 220582 TCTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAA 220523
Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAAT 19445
|| ||||| |||| |||| | ||| ||| | || | | | ||| | | |||
Sbjct 220522 GCCCGAACATGAGGTATAACATGTCTCTCA-CTGGGTTTCAGAGCTTCCCAGTACTGAAT 220464
Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505
||| || || | || || || ||| | |||||||| || ||||| |||| || |||||
Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404
Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| ||| |||||| | |||| || ||||| || |||||
Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365
>seq498
Length=2542268
Score = 228 bits (252), Expect = 9e-55
Identities = 612/932 (66%), Gaps = 59/932 (6%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668
||| |||||| ||||||| | |||| |||||||| | ||| || || || |||||
Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG---TTGAACTCGACATCAC-CCCAT 2186367
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| || || ||| | ||| || |||||||| | || ||||| |||| ||| |||
Sbjct 2186368 CCTCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATT 2186426
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||| || | ||||||||| | ||| |||||| |||
Sbjct 2186427 TTCCATGAAGTGAAATGGATTCTCTAC------------TTTGAA----------AATC- 2186463
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
|| || || || ||||| | || || ||||||| | || ||||| || || |
Sbjct 2186464 -AGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAG 2186522
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAA 18907
|| ||||| | || || ||||| || | || ||||| | ||||| | ||| | | |
Sbjct 2186523 CTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGT-TGACAATTA 2186581
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| | || || | || || || || || || || ||||||| || ||||
Sbjct 2186582 TTTCTTTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 2186641
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| ||||| |||| ||||||||||| || || | ||||| |||||||| | || ||||
Sbjct 2186642 AGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 2186701
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||||||| || || | ||||||||| || | || || || ||||| || ||||
Sbjct 2186702 TCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTT 2186758
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147
| || || ||||| || || | | ||||| || |||| || || | ||||||
Sbjct 2186759 CCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAAC 2186818
Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207
|| ||||| || |||||||| || ||| | ||||| || ||||||| | | || ||||
Sbjct 2186819 GCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGAT 2186878
Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267
|| | ||| | | |||||||| || | || || | | |||||||||||| ||||
Sbjct 2186879 ACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAAT 2186938
Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327
| || ||||| || || || || || || || ||||| | || ||||| | || ||||
Sbjct 2186939 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTT 2186998
Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387
| | ||||| | |||| || ||||| ||||| | ||||| ||||| || || |
Sbjct 2186999 CTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAG 2187055
Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATA 19446
| || || ||||||||| | || ||| | || | | ||| | | |||
Sbjct 2187056 CACGAACGTGAGGTATAAAATGTCTCTC--CTGGGTTTCAGAGCTCCCCAGTGCTGGATA 2187113
Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506
||||| | || || ||||| || ||||| ||||| || ||||||
Sbjct 2187114 TCTTTGG----------------AAAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTACATG 2187157
Query 19507 TTCCATATATCACGATATTGTATAGGAAATAT 19538
| ||| |||||| | |||| || ||||| ||
Sbjct 2187158 TGCCAGATATCATGGTATTTGATGGGAAACAT 2187189
>seq657
Length=1571634
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | || || || | || || ||||| ||||| ||||| || ||
Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 954533 TTTCTTACACCATA 954520
>seq78
Length=6419775
Score = 100 bits (110), Expect = 3e-16
Identities = 113/150 (75%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668
||| |||||| ||||||| | ||||||||||||| | ||| || || || |||||
Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG---TTGAACTCGACATCACCCCCAT 5583623
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
| || |||||| | |||| || |||||||| || || ||||| |||| ||| |||
Sbjct 5583624 CCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATT 5583683
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758
|||||| || ||||||||||| | ||| ||
Sbjct 5583684 TTCCATGAAGTCAAATGGATTCTCTACTTT 5583713
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | ||||| |||||||| | || ||||||||||| | || |
Sbjct 5585561 CCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCT 5585620
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || || || || ||||| ||||| || ||||| || || || || |
Sbjct 5585621 TGAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGG 5585680
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 5585681 CCACAACACGTTCTCC 5585696
>seq184
Length=3314118
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| || || || || | ||||| ||||| || | || ||||| || ||||| || |
Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||||| ||||||||| ||||| ||||| || ||||| || || || || |
Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195
Query 19103 CAACTAGTCTTTCTCC 19118
| || | ||| || ||
Sbjct 1994196 CCACCACTCTCTCCCC 1994211
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| || |||||||| || ||||
Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 1986944 ATAAAATCAAAGGGATTTT 1986962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561891537922440
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