Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1345 289 3e-73 seq498 228 9e-55 seq657 102 9e-17 seq78 100 3e-16 seq184 93.3 5e-14 >seq1345 Length=786133 Score = 289 bits (320), Expect = 3e-73 Identities = 632/939 (67%), Gaps = 48/939 (5%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTA---CTCCCAT 18668 ||| |||||| |||||| | ||||||||||||| | |||||| || | ||||| Sbjct 221261 TTAGAAATCAGTATCCAAGGTAAAAGAATTCTCTG---TTGAATTCGATATCGCCCCCAT 221205 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | | || ||| | ||| || |||||||| || || |||| |||| ||| ||| Sbjct 221204 T----GGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATT 221149 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| || ||||||| ||||| ||| || | || || || || || | || | | Sbjct 221148 TTCCATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCAT 221089 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || ||| | ||||||| ||| || ||||||| || | ||||| || || | Sbjct 221088 CAGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAG 221029 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || ||||| | || || || || || || || ||||| | | || | | ||| | | Sbjct 221028 CTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCAT-TCATA-ATT 220971 Query 18909 AGAT-ACA-ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 | | || ||||| | || | || || || || || || ||||||| || ||| Sbjct 220970 ATTTTACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCA 220911 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || |||||||||| ||||| ||||| || || | ||||| |||||||| | || ||| Sbjct 220910 AAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGC 220851 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || ||||| | || || | ||||||||| || ||||| || ||||||||||| || ||| Sbjct 220850 ATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCT 220791 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || ||||| || || | | ||||||||| |||| || | Sbjct 220790 TCCACGGCGGCAAAGGCCACAACACATTCTCCATATGTAGC---------------CCCT 220746 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || || |||| | || || || ||||| | || |||| ||| || ||| Sbjct 220745 TT--GTCCCCAGT--GCA---------ACGCAAGGCATCTTTTCAATAGCATTGAAGAGA 220699 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 ||| | ||| | | |||||||| || || || | | |||||||||||| ||| Sbjct 220698 TACTCCCTCTCCTTGGAATCTTTAA----TGTGTCAATAAGGAGACTGTACATTTCAGAA 220643 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || ||||||||||| | || || || || || ||||| | | ||||| | || ||| Sbjct 220642 TGTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACT 220583 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||| || ||||| || ||||| ||||| | ||||| |||||||| || Sbjct 220582 TCTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAA 220523 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAAT 19445 || ||||| |||| |||| | ||| ||| | || | | | ||| | | ||| Sbjct 220522 GCCCGAACATGAGGTATAACATGTCTCTCA-CTGGGTTTCAGAGCTTCCCAGTACTGAAT 220464 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| || || | || || || ||| | |||||||| || ||||| |||| || ||||| Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | |||| || ||||| || ||||| Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 228 bits (252), Expect = 9e-55 Identities = 612/932 (66%), Gaps = 59/932 (6%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| |||||| ||||||| | |||| |||||||| | ||| || || || ||||| Sbjct 2186312 TTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG---TTGAACTCGACATCAC-CCCAT 2186367 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | || || ||| | ||| || |||||||| | || ||||| |||| ||| ||| Sbjct 2186368 CCTCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATT 2186426 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| || | ||||||||| | ||| |||||| ||| Sbjct 2186427 TTCCATGAAGTGAAATGGATTCTCTAC------------TTTGAA----------AATC- 2186463 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || ||||| | || || ||||||| | || ||||| || || | Sbjct 2186464 -AGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAG 2186522 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAA 18907 || ||||| | || || ||||| || | || ||||| | ||||| | ||| | | | Sbjct 2186523 CTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGT-TGACAATTA 2186581 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | || || | || || || || || || || ||||||| || |||| Sbjct 2186582 TTTCTTTTACCCTCTGCTCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 2186641 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | ||||| |||||||| | || |||| Sbjct 2186642 AGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 2186701 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||| || || | ||||||||| || | || || || ||||| || |||| Sbjct 2186702 TCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATGCCTT 2186758 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| || || | | ||||| || |||| || || | |||||| Sbjct 2186759 CCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAAC 2186818 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| || |||||||| || ||| | ||||| || ||||||| | | || |||| Sbjct 2186819 GCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGAT 2186878 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 || | ||| | | |||||||| || | || || | | |||||||||||| |||| Sbjct 2186879 ACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAAT 2186938 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || || || ||||| | || ||||| | || |||| Sbjct 2186939 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTT 2186998 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||||| | |||| || ||||| ||||| | ||||| ||||| || || | Sbjct 2186999 CTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAG 2187055 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATA 19446 | || || ||||||||| | || ||| | || | | ||| | | ||| Sbjct 2187056 CACGAACGTGAGGTATAAAATGTCTCTC--CTGGGTTTCAGAGCTCCCCAGTGCTGGATA 2187113 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 ||||| | || || ||||| || ||||| ||||| || |||||| Sbjct 2187114 TCTTTGG----------------AAAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTACATG 2187157 Query 19507 TTCCATATATCACGATATTGTATAGGAAATAT 19538 | ||| |||||| | |||| || ||||| || Sbjct 2187158 TGCCAGATATCATGGTATTTGATGGGAAACAT 2187189 >seq657 Length=1571634 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| ||||| ||||| || || Sbjct 954653 TGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 954594 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 954593 TCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAACTG 954534 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 954533 TTTCTTACACCATA 954520 >seq78 Length=6419775 Score = 100 bits (110), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| |||||| ||||||| | ||||||||||||| | ||| || || || ||||| Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG---TTGAACTCGACATCACCCCCAT 5583623 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | || |||||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 5583624 CCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATT 5583683 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758 |||||| || ||||||||||| | ||| || Sbjct 5583684 TTCCATGAAGTCAAATGGATTCTCTACTTT 5583713 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| |||||||| | || ||||||||||| | || | Sbjct 5585561 CCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCT 5585620 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || || || || ||||| ||||| || ||||| || || || || | Sbjct 5585621 TGAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGG 5585680 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 5585681 CCACAACACGTTCTCC 5585696 >seq184 Length=3314118 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||| ||||| || | || ||||| || ||||| || | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| ||||||||| ||||| ||||| || ||||| || || || || | Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 1994196 CCACCACTCTCTCCCC 1994211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| || |||||||| || |||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 1986944 ATAAAATCAAAGGGATTTT 1986962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561891537922440