Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq155 120 2e-21 seq309 96.9 3e-14 seq23 96.9 3e-14 seq423 86.0 5e-11 >seq155 Length=3997344 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || || |||||||| || || || || || ||||||| Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||| || || ||||| ||||| |||||||||||||| || |||||||| Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| | ||||| Sbjct 782480 TTGCTTATGGGTTAGATAA 782498 >seq309 Length=1536079 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| ||||||||| |||| | ||| | ||||| Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAGACAAAGTACGGCCATCTT 714758 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 714757 CCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCT 714698 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || || | | | | ||||| || | |||| Sbjct 714697 GGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 714638 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 714637 TCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| ||||||||| ||| ||| | ||||| Sbjct 713449 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAA----AGTACGACCATCTT 713396 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || ||||| || || |||||||||||||||||||| ||||| ||||| | Sbjct 713395 CCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCT 713336 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || |||| || || || || | | | | ||||| || | |||| Sbjct 713335 GGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 713276 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 713275 TCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq23 Length=11062726 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 |||| | ||||| ||||| || || ||||| || || || || || || |||||||||| Sbjct 4863729 CAGTTACCACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTG 4863788 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 || ||||||||| | ||||| |||| ||||||||||| || ||||||| ||| || Sbjct 4863789 GAACTATTGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCTGTTA 4863848 Query 550521 CATATG 550526 | |||| Sbjct 4863849 CTTATG 4863854 >seq423 Length=2413410 Score = 86.0 bits (94), Expect = 5e-11 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| ||||||||| |||| | ||| | ||||| Sbjct 7495 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAGACAAAGTACGGCCATCTT 7438 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || | || || | || ||||||||||||||||||||||| ||| | | Sbjct 7437 CCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCT 7378 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGT 563441 | || || ||||| || || || || || | || || || || || | || Sbjct 7377 GGATCTTGGCCTTTACATTTTCTATGGTGTC--TGAGGGTTCAATCTCAAGTGTGATGGT 7320 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| || || ||||| || ||||| Sbjct 7319 TTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027660758066290