Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq155 120 2e-21
seq309 96.9 3e-14
seq23 96.9 3e-14
seq423 86.0 5e-11
>seq155
Length=3997344
Score = 120 bits (132), Expect = 2e-21
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| ||||| || || |||||||| || || || || || |||||||
Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| |||||| || || ||||| ||||| |||||||||||||| || ||||||||
Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||||| | |||||
Sbjct 782480 TTGCTTATGGGTTAGATAA 782498
>seq309
Length=1536079
Score = 96.9 bits (106), Expect = 3e-14
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|||||||||||||| ||| |||| ||||||||| |||| | ||| | |||||
Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAGACAAAGTACGGCCATCTT 714758
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || || || || || || ||||||||||||||||| ||||| ||||| |
Sbjct 714757 CCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCT 714698
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||||| || || || || | | | | ||||| || | ||||
Sbjct 714697 GGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 714638
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || || || || || |||||||| |||||
Sbjct 714637 TCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 91.5 bits (100), Expect = 1e-12
Identities = 148/211 (70%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|||||||||||||| ||| |||| ||||||||| ||| ||| | |||||
Sbjct 713449 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAA----AGTACGACCATCTT 713396
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || ||||| || || |||||||||||||||||||| ||||| ||||| |
Sbjct 713395 CCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCT 713336
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || |||| || || || || | | | | ||||| || | ||||
Sbjct 713335 GGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 713276
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || || || || || |||||||| |||||
Sbjct 713275 TCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq23
Length=11062726
Score = 96.9 bits (106), Expect = 3e-14
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460
|||| | ||||| ||||| || || ||||| || || || || || || ||||||||||
Sbjct 4863729 CAGTTACCACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTG 4863788
Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520
|| ||||||||| | ||||| |||| ||||||||||| || ||||||| ||| ||
Sbjct 4863789 GAACTATTGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCTGTTA 4863848
Query 550521 CATATG 550526
| ||||
Sbjct 4863849 CTTATG 4863854
>seq423
Length=2413410
Score = 86.0 bits (94), Expect = 5e-11
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|||||||||||||| ||| |||| ||||||||| |||| | ||| | |||||
Sbjct 7495 ACAAGATGAAGGGTGGACTCCTTTTG--AATATTGTATTCAGACAAAGTACGGCCATCTT 7438
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || | || || | || ||||||||||||||||||||||| ||| | |
Sbjct 7437 CCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCT 7378
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGT 563441
| || || ||||| || || || || || | || || || || || | ||
Sbjct 7377 GGATCTTGGCCTTTACATTTTCTATGGTGTC--TGAGGGTTCAATCTCAAGTGTGATGGT 7320
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || ||||| || || ||||| || |||||
Sbjct 7319 TTTCCCTGTAAGGGTCTTCACGAAGATCTGCAT 7287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027660758066290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |