Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq470 98.7 1e-15 seq2059 89.7 6e-13 seq3450 86.0 8e-12 seq2521 86.0 8e-12 seq1923 86.0 8e-12 seq1706 86.0 8e-12 seq1286 86.0 8e-12 seq1159 86.0 8e-12 seq989 86.0 8e-12 seq1709 82.4 1e-10 seq1479 82.4 1e-10 seq1088 82.4 1e-10 >seq470 Length=2777046 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 2237 TCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAA 2296 ||| |||| | ||||| ||| ||| |||||||| ||||||||| ||| || |||| || Sbjct 1713197 TCACCTGTTTGAGAATGGGACCTGTGAGATCCACCTGACCTGTATTGTGAAGAATCCAAA 1713138 Query 2297 TGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCT--ACGCGAGCCCAAC 2354 | | | |||| | |||| |||| | || || | | ||| | | || || || Sbjct 1713137 TCATACTGTCTCAGTTGGATGGCAGGCGTCAGG--AGGCACCTCTTTAAGGGAACCAAAT 1713080 Query 2355 CTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAA 2414 ||||| ||||||||||| | ||| |||||| |||| || || ||| || || Sbjct 1713079 CTCACTGTCTCCTGGGACCTGAAGAATTCCAGTGACCAGAGTTATACCTGCCAAGCTGAG 1713020 Query 2415 AACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 |||||||| |||||||| || || | ||||| ||||||| Sbjct 1713019 AACGCTGTCAGCAATCTGTCCATCTCTGTCTCTGCCCAGA 1712980 >seq2059 Length=307934 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14174 TAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGAT 14233 || ||| ||||| || || | |||||||||||| ||| || || ||||| || || | Sbjct 240599 TAGGCCCTCATGGTGCACATGACATGTGTATCTCTGCTCCTCCCCGGAAGGCACCACCAC 240658 Query 14234 AGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATC 14293 |||| |||| || || || ||||||||||| | || | ||| || | |||| |||| Sbjct 240659 AGCTGCCCACTTCTGGAAGGTCCCATCTCCTGAAGGCCTTGTCTCCACAAGCTCCATATC 240718 Query 14294 TTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACC 14353 ||| | ||||| || || || | ||| || | || ||||| || || || || Sbjct 240719 CTGAGTCCAGTCTTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGCC 240778 Query 14354 CAAAGCCCAGCA 14365 ||| |||||||| Sbjct 240779 CAAGGCCCAGCA 240790 >seq3450 Length=10440 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 |||||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 4157 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 4216 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | | |||| | || ||| Sbjct 4217 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 4276 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| Sbjct 4277 GTCTGTTCCTCCCCATCCCTCTCCCAGGTCATGAAGATCTCAGCAGGGTAGAAGCCCAGG 4336 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 4337 GCCCAGCACC 4346 >seq2521 Length=31182 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 |||||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 6439 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 6380 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | | |||| | || ||| Sbjct 6379 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 6320 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| Sbjct 6319 GTCTGTTCCTCCCCATCCCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 6260 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 6259 GCCCAGCACC 6250 >seq1923 Length=47214 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| | || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 7459 CCCTCATGGTACACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGTACCACCACAGCT 7400 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| ||||| || | || || | | |||| | || ||| Sbjct 7399 GCCCACTTCTGGAAGGTTCCATCCCCAGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 7340 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || ||||| || | | ||| || || || ||||| || || || |||| Sbjct 7339 GTCTGTTCCTCTCCATCCCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 7280 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 7279 GCCCAGCACC 7270 >seq1706 Length=50208 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | |||||||||||| ||| || |||||||| || || | |||| Sbjct 6484 CCCTCATGGTGCACATGACATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 6425 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| |||| || | || || | | |||| | || ||| Sbjct 6424 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 6365 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| Sbjct 6364 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAAATCTCAGCAGGGTAGAAGCCCAGG 6305 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 6304 GCCCAGCACC 6295 >seq1286 Length=65233 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 |||||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 15041 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 15100 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | | |||| | || ||| Sbjct 15101 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 15160 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| Sbjct 15161 GTCTGTTCCTCCCCATCCCTCTGCCAGGTCATGAAAATCTCAGCAGGGTAGAAGCCCAGG 15220 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 15221 GCCCAGCACC 15230 >seq1159 Length=122000 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 77766 CCCTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 77825 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| |||| || | || || | | |||| | || ||| Sbjct 77826 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCAATGTCCTGA 77885 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | |||| || || |||| | ||| || || || ||||| || || || |||| Sbjct 77886 ATCAGATCCTCCCCATCTCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 77945 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 77946 GCCCAGCACC 77955 >seq989 Length=535891 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 14183 ATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCA 14242 ||| || || | ||||||||||| ||| ||||||||||| || || | |||| |||| Sbjct 212216 ATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTGCCCA 212157 Query 14243 TTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTG 14302 || || || || |||||||| | || | || | | | |||| | || || | || Sbjct 212156 CTTCTGGAAGGTTCCATCTCCTGAAGGCCTGGTGTTCACCAGCTCCATGTCCTGGGTCTG 212097 Query 14303 ATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCA 14362 ||||| || || | | ||| || | |||| ||||| || || || || | |||||| Sbjct 212096 GTCTTCCCCATCCCTCTTCCAGGTCAGGGTTATCTCAGCTGGGTAGAATCCGAGAGCCCA 212037 Query 14363 GCACCGTAAAGT 14374 ||||| ||| || Sbjct 212036 GCACCTTAAGGT 212025 >seq1709 Length=58760 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||||||| || || | |||| Sbjct 58065 CCCTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 58006 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| |||| || | || || | | |||| | || ||| Sbjct 58005 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 57946 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| Sbjct 57945 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAGATCTCAGCAGGGTAGAAGCCCAGG 57886 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 57885 GCCCAGCACC 57876 >seq1479 Length=175782 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236 ||| ||||| | || | |||||||||||| ||| || |||||||| || || | ||| Sbjct 89662 GCCCTCATGATTCACATGACATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGC 89721 Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296 | |||| || || || | |||||||| || || | || |||||| ||| |||| | Sbjct 89722 TGCCCACTTCTGGAAGTTTCCATCTCCTGCAGGCCTGGTCTCTATCACCTCCATATCCAG 89781 Query 14297 ACTTTGATCTTCT-CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCA 14355 | | || | | || || |||| | ||| || | | || ||||| || || || ||| Sbjct 89782 ATTCTGGT-TGCTCCCATCTCTCTGCCAGGTTAGGGTGATTTCAGCAGGGTAGAAGTCCA 89840 Query 14356 AAGCCCAGCACCGTAAAGT 14374 |||||||||| || ||| Sbjct 89841 GGGCCCAGCACCCTAGAGT 89859 >seq1088 Length=669290 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||| | |||| || |||| ||| || || | |||| Sbjct 767 CCCTCATGGTGCACATGACATGTGTAATTCTTCTCCTCCCCAGCAGGAACCACCACAGCT 708 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| |||| || | || || | | |||| | || ||| Sbjct 707 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 648 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || || || ||||| || || || |||| | Sbjct 647 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAGATCTCAGCAGGGTAGAAGCCCAGA 588 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 587 GCCCAGCACC 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629039974177160