Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq470 98.7 1e-15
seq2059 89.7 6e-13
seq3450 86.0 8e-12
seq2521 86.0 8e-12
seq1923 86.0 8e-12
seq1706 86.0 8e-12
seq1286 86.0 8e-12
seq1159 86.0 8e-12
seq989 86.0 8e-12
seq1709 82.4 1e-10
seq1479 82.4 1e-10
seq1088 82.4 1e-10
>seq470
Length=2777046
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 2237 TCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAA 2296
||| |||| | ||||| ||| ||| |||||||| ||||||||| ||| || |||| ||
Sbjct 1713197 TCACCTGTTTGAGAATGGGACCTGTGAGATCCACCTGACCTGTATTGTGAAGAATCCAAA 1713138
Query 2297 TGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCT--ACGCGAGCCCAAC 2354
| | | |||| | |||| |||| | || || | | ||| | | || || ||
Sbjct 1713137 TCATACTGTCTCAGTTGGATGGCAGGCGTCAGG--AGGCACCTCTTTAAGGGAACCAAAT 1713080
Query 2355 CTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAA 2414
||||| ||||||||||| | ||| |||||| |||| || || ||| || ||
Sbjct 1713079 CTCACTGTCTCCTGGGACCTGAAGAATTCCAGTGACCAGAGTTATACCTGCCAAGCTGAG 1713020
Query 2415 AACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454
|||||||| |||||||| || || | ||||| |||||||
Sbjct 1713019 AACGCTGTCAGCAATCTGTCCATCTCTGTCTCTGCCCAGA 1712980
>seq2059
Length=307934
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 14174 TAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGAT 14233
|| ||| ||||| || || | |||||||||||| ||| || || ||||| || || |
Sbjct 240599 TAGGCCCTCATGGTGCACATGACATGTGTATCTCTGCTCCTCCCCGGAAGGCACCACCAC 240658
Query 14234 AGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATC 14293
|||| |||| || || || ||||||||||| | || | ||| || | |||| ||||
Sbjct 240659 AGCTGCCCACTTCTGGAAGGTCCCATCTCCTGAAGGCCTTGTCTCCACAAGCTCCATATC 240718
Query 14294 TTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACC 14353
||| | ||||| || || || | ||| || | || ||||| || || || ||
Sbjct 240719 CTGAGTCCAGTCTTCCCCATCCCGCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGCC 240778
Query 14354 CAAAGCCCAGCA 14365
||| ||||||||
Sbjct 240779 CAAGGCCCAGCA 240790
>seq3450
Length=10440
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|||||||| || || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 4157 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 4216
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| || || || | || || | | |||| | || |||
Sbjct 4217 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 4276
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || ||||
Sbjct 4277 GTCTGTTCCTCCCCATCCCTCTCCCAGGTCATGAAGATCTCAGCAGGGTAGAAGCCCAGG 4336
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 4337 GCCCAGCACC 4346
>seq2521
Length=31182
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|||||||| || || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 6439 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 6380
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| || || || | || || | | |||| | || |||
Sbjct 6379 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 6320
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || ||||
Sbjct 6319 GTCTGTTCCTCCCCATCCCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 6260
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 6259 GCCCAGCACC 6250
>seq1923
Length=47214
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| | || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 7459 CCCTCATGGTACACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGTACCACCACAGCT 7400
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| ||||| || | || || | | |||| | || |||
Sbjct 7399 GCCCACTTCTGGAAGGTTCCATCCCCAGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 7340
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || ||||| || | | ||| || || || ||||| || || || ||||
Sbjct 7339 GTCTGTTCCTCTCCATCCCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 7280
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 7279 GCCCAGCACC 7270
>seq1706
Length=50208
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | |||||||||||| ||| || |||||||| || || | ||||
Sbjct 6484 CCCTCATGGTGCACATGACATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 6425
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| |||| || | || || | | |||| | || |||
Sbjct 6424 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 6365
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || ||||
Sbjct 6364 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAAATCTCAGCAGGGTAGAAGCCCAGG 6305
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 6304 GCCCAGCACC 6295
>seq1286
Length=65233
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|||||||| || || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 15041 CCTTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 15100
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| || || || | || || | | |||| | || |||
Sbjct 15101 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGA 15160
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || ||||
Sbjct 15161 GTCTGTTCCTCCCCATCCCTCTGCCAGGTCATGAAAATCTCAGCAGGGTAGAAGCCCAGG 15220
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 15221 GCCCAGCACC 15230
>seq1159
Length=122000
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 77766 CCCTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 77825
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| |||| || | || || | | |||| | || |||
Sbjct 77826 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCAATGTCCTGA 77885
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| |||| || || |||| | ||| || || || ||||| || || || ||||
Sbjct 77886 ATCAGATCCTCCCCATCTCTCTGCCAGGTCATGGAGATCTCAGCAGGGTAGAAGCCCAGG 77945
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 77946 GCCCAGCACC 77955
>seq989
Length=535891
Score = 86.0 bits (94), Expect = 8e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 14183 ATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCA 14242
||| || || | ||||||||||| ||| ||||||||||| || || | |||| ||||
Sbjct 212216 ATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTGCCCA 212157
Query 14243 TTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTG 14302
|| || || || |||||||| | || | || | | | |||| | || || | ||
Sbjct 212156 CTTCTGGAAGGTTCCATCTCCTGAAGGCCTGGTGTTCACCAGCTCCATGTCCTGGGTCTG 212097
Query 14303 ATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCA 14362
||||| || || | | ||| || | |||| ||||| || || || || | ||||||
Sbjct 212096 GTCTTCCCCATCCCTCTTCCAGGTCAGGGTTATCTCAGCTGGGTAGAATCCGAGAGCCCA 212037
Query 14363 GCACCGTAAAGT 14374
||||| ||| ||
Sbjct 212036 GCACCTTAAGGT 212025
>seq1709
Length=58760
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||| || |||||||| || || | ||||
Sbjct 58065 CCCTCATGGTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCT 58006
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| |||| || | || || | | |||| | || |||
Sbjct 58005 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 57946
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || ||||
Sbjct 57945 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAGATCTCAGCAGGGTAGAAGCCCAGG 57886
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 57885 GCCCAGCACC 57876
>seq1479
Length=175782
Score = 82.4 bits (90), Expect = 1e-10
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236
||| ||||| | || | |||||||||||| ||| || |||||||| || || | |||
Sbjct 89662 GCCCTCATGATTCACATGACATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGC 89721
Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296
| |||| || || || | |||||||| || || | || |||||| ||| |||| |
Sbjct 89722 TGCCCACTTCTGGAAGTTTCCATCTCCTGCAGGCCTGGTCTCTATCACCTCCATATCCAG 89781
Query 14297 ACTTTGATCTTCT-CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCA 14355
| | || | | || || |||| | ||| || | | || ||||| || || || |||
Sbjct 89782 ATTCTGGT-TGCTCCCATCTCTCTGCCAGGTTAGGGTGATTTCAGCAGGGTAGAAGTCCA 89840
Query 14356 AAGCCCAGCACCGTAAAGT 14374
|||||||||| || |||
Sbjct 89841 GGGCCCAGCACCCTAGAGT 89859
>seq1088
Length=669290
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||| | |||| || |||| ||| || || | ||||
Sbjct 767 CCCTCATGGTGCACATGACATGTGTAATTCTTCTCCTCCCCAGCAGGAACCACCACAGCT 708
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| |||| || | || || | | |||| | || |||
Sbjct 707 GCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGA 648
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| || || || || || | | ||| || || || ||||| || || || |||| |
Sbjct 647 GTCTGTTCCTCCCCATCCCTCTGCCAGGTTATGGAGATCTCAGCAGGGTAGAAGCCCAGA 588
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 587 GCCCAGCACC 578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629039974177160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |