Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq498 145 9e-30 seq1345 138 1e-27 seq78 91.5 2e-13 >seq498 Length=2542268 Score = 145 bits (160), Expect = 9e-30 Identities = 306/455 (67%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| ||||| || || ||||| || || | ||||| ||||| || | Sbjct 2186635 CAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGG 2186694 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | || || || | ||| ||||||| || ||||| || ||||| Sbjct 2186695 CCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAG 2186751 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| || || ||||| || |||| |||| | | | || | | || || Sbjct 2186752 ATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAA 2186811 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||| | ||| || ||||| || ||| | || ||||| || || | Sbjct 2186812 ATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATG 2186871 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 |||||| | | | || | | |||| | || || || ||||| || | ||| |||||| Sbjct 2186872 AAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATT 2186931 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || || ||||| || || || || || ||||| ||||| | || || | | | Sbjct 2186932 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACT 2186991 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 ||||| || | ||| | || | ||||| ||||| ||||| | ||||| ||||| Sbjct 2186992 TGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCG 2187048 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 ||||||||| |||| | |||||||||||| || Sbjct 2187049 AAGAAAGCACGAACGTGAGGTATAAAATGTCTCTC 2187083 >seq1345 Length=786133 Score = 138 bits (152), Expect = 1e-27 Identities = 562/879 (64%), Gaps = 44/879 (5%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||| || || || ||| | | || || || |||||||||| ||||||||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006 ||| || ||||||| ||| | || | || | || | | ||| || || Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 ||| ||| | |||||||| ||||| | ||| || | ||| || || || || || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 37067 TACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATAT 37125 || || | || || ||| ||| | | | |||| | | |||| ||| ||| | Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCT-CTATCCTCATGGCATTCATAATTATTT 220967 Query 37126 TAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATAT--TTAAACAATAAACATGCAA 37182 || | ||| ||| | | || | | | | | || |||| | || |||| Sbjct 220966 TAC---TTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 220910 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 | ||||||||||| || |||||||| || || | ||||| ||||| || | || |||| Sbjct 220909 AGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 220850 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | | || | || || | ||| ||||||| ||||||||| ||||||||||| || |||| Sbjct 220849 TAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTT 220790 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362 | || || ||||| || |||| || | || | || | || Sbjct 220789 CCACGGCGGCAAAGGCCACAACACATTCTCCATATGT----------------AGCC--- 220749 Query 37363 tttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAA 37422 ||||||| || | | ||| || || ||||||| || || |||||| Sbjct 220748 CCTTTGTCC------CC---AGTGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGAT 220698 Query 37423 AGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482 | | | || | |||| ||| | || ||||| || | ||| ||||||||||| | Sbjct 220697 ACTCCCTCTCCTTGGAATCT-TTA---ATGTGTCAATAAGGAGACTGTACATTTCAGAAT 220642 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACAT 37542 | |||||||| || | || || || ||||| ||||| | | || | | |||||| | Sbjct 220641 GTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTT 220582 Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602 | | || || | ||||| ||||| ||||| | ||||| ||||||||||||| Sbjct 220581 CTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAG 220522 Query 37603 CAAGAACATATTTTATAAAATGTCTTTCA--TCATTTGATAATTTTTTCCAATCATTAAT 37660 | |||||| ||||| |||||| ||| ||| | | || ||| | | ||| Sbjct 220521 CCCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAGA--GCTTCCCAGTACTGAAT 220464 Query 37661 ATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACAT 37720 ||| || || | || || || ||| | |||||||| ||| | || ||||| Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404 Query 37721 CGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 | ||| ||||||| | || || ||||| || ||||| Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq78 Length=6419775 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| | || ||||| || ||||| | || || || |||||||||||||| Sbjct 5583612 CATCACCCCCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 5583671 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||||||||| Sbjct 5583672 TAGTGAAATATTTTCCATGAAGTCAAATGGATT 5583704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592087862152840