Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq498 145 9e-30
seq1345 138 1e-27
seq78 91.5 2e-13
>seq498
Length=2542268
Score = 145 bits (160), Expect = 9e-30
Identities = 306/455 (67%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235
|| ||||| ||||| ||||| || || ||||| || || | ||||| ||||| || |
Sbjct 2186635 CAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGG 2186694
Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295
|| ||||| | || || || | ||| ||||||| || ||||| || |||||
Sbjct 2186695 CCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAG 2186751
Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355
|| ||||| || || ||||| || |||| |||| | | | || | | || ||
Sbjct 2186752 ATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAA 2186811
Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415
||||| | ||| || ||||| || ||| | || ||||| || || |
Sbjct 2186812 ATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATG 2186871
Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475
|||||| | | | || | | |||| | || || || ||||| || | ||| ||||||
Sbjct 2186872 AAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATT 2186931
Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535
||||| || || ||||| || || || || || ||||| ||||| | || || | | |
Sbjct 2186932 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACT 2186991
Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595
||||| || | ||| | || | ||||| ||||| ||||| | ||||| |||||
Sbjct 2186992 TGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCG 2187048
Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630
||||||||| |||| | |||||||||||| ||
Sbjct 2187049 AAGAAAGCACGAACGTGAGGTATAAAATGTCTCTC 2187083
>seq1345
Length=786133
Score = 138 bits (152), Expect = 1e-27
Identities = 562/879 (64%), Gaps = 44/879 (5%)
Strand=Plus/Minus
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
||| || || || ||| | | || || || |||||||||| ||||||||| ||||||||
Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146
Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006
||| || ||||||| ||| | || | || | || | | ||| || ||
Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086
Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066
||| ||| | |||||||| ||||| | ||| || | ||| || || || || ||
Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026
Query 37067 TACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATAT 37125
|| || | || || ||| ||| | | | |||| | | |||| ||| ||| |
Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCT-CTATCCTCATGGCATTCATAATTATTT 220967
Query 37126 TAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATAT--TTAAACAATAAACATGCAA 37182
|| | ||| ||| | | || | | | | | || |||| | || ||||
Sbjct 220966 TAC---TTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAA 220910
Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242
| ||||||||||| || |||||||| || || | ||||| ||||| || | || ||||
Sbjct 220909 AGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCA 220850
Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302
| | || | || || | ||| ||||||| ||||||||| ||||||||||| || ||||
Sbjct 220849 TAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTT 220790
Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362
| || || ||||| || |||| || | || | || | ||
Sbjct 220789 CCACGGCGGCAAAGGCCACAACACATTCTCCATATGT----------------AGCC--- 220749
Query 37363 tttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAA 37422
||||||| || | | ||| || || ||||||| || || ||||||
Sbjct 220748 CCTTTGTCC------CC---AGTGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGAT 220698
Query 37423 AGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482
| | | || | |||| ||| | || ||||| || | ||| ||||||||||| |
Sbjct 220697 ACTCCCTCTCCTTGGAATCT-TTA---ATGTGTCAATAAGGAGACTGTACATTTCAGAAT 220642
Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACAT 37542
| |||||||| || | || || || ||||| ||||| | | || | | |||||| |
Sbjct 220641 GTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTT 220582
Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602
| | || || | ||||| ||||| ||||| | ||||| |||||||||||||
Sbjct 220581 CTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAG 220522
Query 37603 CAAGAACATATTTTATAAAATGTCTTTCA--TCATTTGATAATTTTTTCCAATCATTAAT 37660
| |||||| ||||| |||||| ||| ||| | | || ||| | | |||
Sbjct 220521 CCCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAGA--GCTTCCCAGTACTGAAT 220464
Query 37661 ATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACAT 37720
||| || || | || || || ||| | |||||||| ||| | || |||||
Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404
Query 37721 CGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759
| ||| ||||||| | || || ||||| || |||||
Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365
>seq78
Length=6419775
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| || ||||| | || ||||| || ||||| | || || || ||||||||||||||
Sbjct 5583612 CATCACCCCCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 5583671
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964
|||||| ||||||||||| || |||||||||||
Sbjct 5583672 TAGTGAAATATTTTCCATGAAGTCAAATGGATT 5583704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592087862152840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |