Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq154 107 2e-18 >seq154 Length=6791889 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| || || | ||| ||| |||| || | | ||| | | |||| Sbjct 1707850 AACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATCT 1707791 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||||| || || ||| | ||| ||||| || ||||| |||| ||||| Sbjct 1707790 TCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATCC 1707731 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| ||||| || | ||| || || || ||| ||| Sbjct 1707730 TGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGTT 1707671 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || || ||||||||||| Sbjct 1707670 TTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396129062608797