Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq498 183 6e-41 seq2082 181 2e-40 seq410 141 2e-28 seq1345 125 1e-23 seq78 93.3 8e-14 seq657 89.7 1e-12 seq184 89.7 1e-12 seq38 84.2 4e-11 >seq498 Length=2542268 Score = 183 bits (202), Expect = 6e-41 Identities = 407/601 (68%), Gaps = 21/601 (3%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||||||||| | ||| || ||| |||||| || ||||| ||| ||||| |||| Sbjct 2186480 ACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCTTCACAGGCAAGGCCT 2186539 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 || || |||| || ||||||| ||| || | | | || | || || | || Sbjct 2186540 CCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTTCTTTTACCCTCTGCT 2186599 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || || |||| |||||||||| | | || |||||||||||| | ||| |||| Sbjct 2186600 CCGATGGCTTGTGTACCAGGTGCTTGA---ACATCAGGCAGGCAAAGTCACAGTGTAAGC 2186656 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | ||||| | |||||| ||| | ||||| || || || ||||| | ||| || | Sbjct 2186657 CCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCT 2186716 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| |||| | |||||| || |||||||||||| ||||| || || || | Sbjct 2186717 TGAGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTTCCACGGCGGCAAAGG 2186773 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC-AGGAAAGCGCCCAGTCT 48331 || | | |||| | | | ||| | ||||| | |||| | | ||| |||||||| Sbjct 2186774 CGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATCCAACGCAAG-GCCCAGTCG 2186832 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391 ||||||||||| | | |||||||| ||||| || |||||| | || | ||| ||| Sbjct 2186833 GCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATACT--CCCTCTCCT 2186890 Query 48392 --GCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCT 48446 | || || ||||| | | || || | |||||| ||||| || | || | Sbjct 2186891 TAGAATCTTTAATGTAGGTGTCAATAAGGAGACT---GTACATTTCAGAATGTATGTTTT 2186947 Query 48447 CTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGA 48506 | || || || ||||| || ||||| | |||||| || || |||||| | | Sbjct 2186948 CCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAA 2187007 Query 48507 ATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACAT 48566 ||| ||||| || |||||||||||||| | || || || ||||| ||| | || | Sbjct 2187008 ATCGCTCCA--AG-TTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCACGAACGT 2187064 Query 48567 G 48567 | Sbjct 2187065 G 2187065 >seq2082 Length=196826 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 87419 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 87478 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| |||| |||||| |||||| Sbjct 87479 TCCCGTAGGAGGCCCGCGGTGCTCGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACC 87538 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 87539 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 87598 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 87599 CTGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 87658 Query 241625 GAC 241627 ||| Sbjct 87659 GAC 87661 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||| |||||||| | ||||| || | | |||||| | ||||| ||||||| Sbjct 87456 TCTGCTTGAGCTGGGCCACTTGCTCCCGTAGGAGGCCCGCGGTGCTCGACAGCCCCGCGT 87515 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | |||| |||||| | || |||||||| ||||||||||| |||||||| Sbjct 87516 TCTCAGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 87570 >seq410 Length=930769 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 431609 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 431668 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 431669 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATCCGCTCCAGC 431728 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 431729 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 431788 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||||||||| || ||| Sbjct 431789 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGAC 431821 >seq1345 Length=786133 Score = 125 bits (138), Expect = 1e-23 Identities = 292/437 (67%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || |||||| |||||||||||||||||||| | || | || || || ||| Sbjct 221204 TGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTCC 221145 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| || | || | || | | | ||| | ||| | | ||||||| Sbjct 221144 ATGAAGTCAAATGAATTTTCTACTTTGAAAATCT-TGTTAAACCC--CAGCTCCAGCATC 221088 Query 47960 TGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 | ||| | || | || ||||| | ||| || || |||||| || || || Sbjct 221087 AGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGC 221028 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||||| |||| ||||| ||||||| ||||||| || ||| | | | || Sbjct 221027 TTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATT 220968 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | || | ||| | || |||| |||||||||| | | || ||||||| Sbjct 220967 TTACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGA---ACATCAGGCAGGCA 220911 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || ||||| || || | |||||| ||| | ||||| || || || ||| Sbjct 220910 AAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGC 220851 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | |||| || || |||||||| |||| || ||||| ||||| ||||||||||| Sbjct 220850 ATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCT 220791 Query 48257 TCCACTGCCGCGAACGC 48273 ||||| || || || || Sbjct 220790 TCCACGGCGGCAAAGGC 220774 >seq78 Length=6419775 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||| ||| | ||||| || || || ||||| | |||| || ||| Sbjct 5585563 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 5585622 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || | |||||||| ||||||||||||||||| ||||| || ||||| || Sbjct 5585623 AGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGC 5585681 >seq657 Length=1571634 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| |||||| |||||||| || ||| Sbjct 950062 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGG 950003 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 950002 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTG 949944 Query 213647 GGA 213649 || Sbjct 949943 AGA 949941 >seq184 Length=3314118 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| |||||||||| | || || || ||| || ||||||| || |||| || Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || || || || ||||||||||| ||||| ||||| || ||||| || Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGC 1994196 >seq38 Length=12148825 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 5956025 TTCACTTTTTCCTCTAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 5956084 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 5956085 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 5956144 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 5956145 ATGGGGGAC 5956153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931172750928640