Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq498 122 2e-22
seq1345 109 1e-18
seq78 100 5e-16
seq184 93.3 8e-14
>seq498
Length=2542268
Score = 122 bits (134), Expect = 2e-22
Identities = 315/471 (67%), Gaps = 23/471 (5%)
Strand=Plus/Minus
Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662
|| ||||| ||||| ||| | ||||| || ||||| || ||| |||| | |
Sbjct 2187056 GCTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTTG---GAGCGATTTAGCCAA 2187000
Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTG 25722
||||| || | |||||| |||||||| || ||||| || ||||| ||||| |
Sbjct 2186999 GAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 2186940
Query 25723 CACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGA 25779
|| ||||| |||| || || || || || ||||||| ||| |||||
Sbjct 2186939 CATTCTGAAATGTA---CAGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGG 2186883
Query 25780 GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCC 25839
|| || || ||| || || || || | |||| |||||| ||||||
Sbjct 2186882 GAGTATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCC 2186823
Query 25840 ATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896
|| ||||| ||| |||| ||||| | | || || | || ||||||||
Sbjct 2186822 TTGCGTTGGATTTGGGACAA--AGAG-GCTACATACAGAGAACGTGTTGTCGCCTTTGCC 2186766
Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAG 25956
|| ||||| |||||||| ||| ||||| || | | || |||||||||||| || ||
Sbjct 2186765 GCCGTGGAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAG 2186709
Query 25957 GGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015
|| |||||||| || ||| |||||||| ||||| |||||||| |||||||| | ||
Sbjct 2186708 GGACTGATGCCCGGCCT-TACATTTTCCAATGAGCTTATCAGCAGAGACGAGGGCTTACA 2186650
Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066
| | || |||||||||||| | | || | ||| || | ||||| || ||
Sbjct 2186649 CTGTGACTTTGCCTGCCTGATGTTCAAG---CACCTGGTACACAAGCCATC 2186602
>seq1345
Length=786133
Score = 109 bits (120), Expect = 1e-18
Identities = 149/202 (74%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923
||||| | ||| || | | || |||||||| || ||||| |||||||| || |||
Sbjct 220750 GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGT 220809
Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTT 25981
|| ||||| | || |||||||| ||| || |||||| |||||||| || ||| ||||
Sbjct 220810 TCTTTTGCATCAATATTCTGGCTGAAGAAGC-GGGGACTTATGCCCGGCCT-TACATTTT 220867
Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
|||| ||||| |||||||| || ||||| | || | || |||||||||||| | | ||
Sbjct 220868 CCAATGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTTCA 220927
Query 26042 CGGGCCACTTGCTCCACAAACC 26063
| ||| || | ||||| ||
Sbjct 220928 AG---CACCTGGTACACAAGCC 220946
>seq78
Length=6419775
Score = 100 bits (110), Expect = 5e-16
Identities = 101/126 (80%), Gaps = 4/126 (3%)
Strand=Plus/Minus
Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944
|| ||||| || || ||||| |||||||| ||| ||||| || || |||| ||||||
Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625
Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002
|||||| || |||||| |||||||| || ||| |||||||| ||||| |||||||| |
Sbjct 5585624 CTCAAGAAG-CGGGGACTGATGCCCGGCCT-TACATTTTCCAATGAGCTTATCAGCAGAG 5585567
Query 26003 ACGAGG 26008
||||||
Sbjct 5585566 ACGAGG 5585561
>seq184
Length=3314118
Score = 93.3 bits (102), Expect = 8e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||| || || ||||| ||||| || ||| || || ||||| || || ||||
Sbjct 1994201 TGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCT 1994142
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
|||| ||| ||| || ||||||||| || ||||| || ||||||||||||||||
Sbjct 1994141 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGG 1994082
Query 26003 ACGAGG 26008
| ||||
Sbjct 1994081 ATGAGG 1994076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928485789874240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |