Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq498 122 2e-22 seq1345 109 1e-18 seq78 100 5e-16 seq184 93.3 8e-14 >seq498 Length=2542268 Score = 122 bits (134), Expect = 2e-22 Identities = 315/471 (67%), Gaps = 23/471 (5%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || ||||| ||||| ||| | ||||| || ||||| || ||| |||| | | Sbjct 2187056 GCTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTTG---GAGCGATTTAGCCAA 2187000 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTG 25722 ||||| || | |||||| |||||||| || ||||| || ||||| ||||| | Sbjct 2186999 GAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 2186940 Query 25723 CACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGA 25779 || ||||| |||| || || || || || ||||||| ||| ||||| Sbjct 2186939 CATTCTGAAATGTA---CAGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGG 2186883 Query 25780 GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCC 25839 || || || ||| || || || || | |||| |||||| |||||| Sbjct 2186882 GAGTATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCC 2186823 Query 25840 ATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 || ||||| ||| |||| ||||| | | || || | || |||||||| Sbjct 2186822 TTGCGTTGGATTTGGGACAA--AGAG-GCTACATACAGAGAACGTGTTGTCGCCTTTGCC 2186766 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAG 25956 || ||||| |||||||| ||| ||||| || | | || |||||||||||| || || Sbjct 2186765 GCCGTGGAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAG 2186709 Query 25957 GGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 || |||||||| || ||| |||||||| ||||| |||||||| |||||||| | || Sbjct 2186708 GGACTGATGCCCGGCCT-TACATTTTCCAATGAGCTTATCAGCAGAGACGAGGGCTTACA 2186650 Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 | | || |||||||||||| | | || | ||| || | ||||| || || Sbjct 2186649 CTGTGACTTTGCCTGCCTGATGTTCAAG---CACCTGGTACACAAGCCATC 2186602 >seq1345 Length=786133 Score = 109 bits (120), Expect = 1e-18 Identities = 149/202 (74%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 ||||| | ||| || | | || |||||||| || ||||| |||||||| || ||| Sbjct 220750 GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGT 220809 Query 25924 TCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTT 25981 || ||||| | || |||||||| ||| || |||||| |||||||| || ||| |||| Sbjct 220810 TCTTTTGCATCAATATTCTGGCTGAAGAAGC-GGGGACTTATGCCCGGCCT-TACATTTT 220867 Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| ||||| |||||||| || ||||| | || | || |||||||||||| | | || Sbjct 220868 CCAATGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTTCA 220927 Query 26042 CGGGCCACTTGCTCCACAAACC 26063 | ||| || | ||||| || Sbjct 220928 AG---CACCTGGTACACAAGCC 220946 >seq78 Length=6419775 Score = 100 bits (110), Expect = 5e-16 Identities = 101/126 (80%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||| || || ||||| |||||||| ||| ||||| || || |||| |||||| Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| || |||||| |||||||| || ||| |||||||| ||||| |||||||| | Sbjct 5585624 CTCAAGAAG-CGGGGACTGATGCCCGGCCT-TACATTTTCCAATGAGCTTATCAGCAGAG 5585567 Query 26003 ACGAGG 26008 |||||| Sbjct 5585566 ACGAGG 5585561 >seq184 Length=3314118 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || || ||||| ||||| || ||| || || ||||| || || |||| Sbjct 1994201 TGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCT 1994142 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||||||| || ||||| || |||||||||||||||| Sbjct 1994141 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGG 1994082 Query 26003 ACGAGG 26008 | |||| Sbjct 1994081 ATGAGG 1994076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928485789874240