Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_019559.1
Length=202946
Score E
Sequences producing significant alignments: (Bits) Value
seq65 147 3e-30
>seq65
Length=10862630
Score = 147 bits (162), Expect = 3e-30
Identities = 220/310 (71%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760
||| |||||||| || ||||||| ||| | | || | | || || || | |||
Sbjct 8834465 AGTGGAAGTGGTGACCCAGGATG-AAAGAAAGCTGCTGCACACACCTGCATCTTTACGAT 8834407
Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820
| || ||||| | || ||||| || ||||| || ||||| || |||||||| |||
Sbjct 8834406 GTTCTCTGAAACTGTCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAA 8834347
Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880
| |||||||| |||| ||| || ||||||||||| || || || | || || |||| |
Sbjct 8834346 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAACCTGCATACA 8834287
Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940
|||| || | || || || || | || || | |||| || || || || |||||
Sbjct 8834286 AAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACA 8834227
Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000
|||||||||||||||| ||||| || |||||||| || |||| || | |||| |||
Sbjct 8834226 CAACACTGGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCTTGCTGGGAAGA 8834167
Query 154001 TATCGGGAAC 154010
| || |||||
Sbjct 8834166 TCTCAGGAAC 8834157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 649048237742960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |