Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq65 147 3e-30 >seq65 Length=10862630 Score = 147 bits (162), Expect = 3e-30 Identities = 220/310 (71%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| || ||||||| ||| | | || | | || || || | ||| Sbjct 8834465 AGTGGAAGTGGTGACCCAGGATG-AAAGAAAGCTGCTGCACACACCTGCATCTTTACGAT 8834407 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||| | || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 8834406 GTTCTCTGAAACTGTCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAA 8834347 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| || ||||||||||| || || || | || || |||| | Sbjct 8834346 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGGGTTGTAGTCCAACCTGCATACA 8834287 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 |||| || | || || || || | || || | |||| || || || || ||||| Sbjct 8834286 AAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACA 8834227 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||||||||||||||| ||||| || |||||||| || |||| || | |||| ||| Sbjct 8834226 CAACACTGGATGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTCTTGCTGGGAAGA 8834167 Query 154001 TATCGGGAAC 154010 | || ||||| Sbjct 8834166 TCTCAGGAAC 8834157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649048237742960