Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq23 165 5e-35
seq155 113 3e-19
seq309 105 4e-17
seq423 96.9 2e-14
seq382 86.0 4e-11
>seq23
Length=11062726
Score = 165 bits (182), Expect = 5e-35
Identities = 454/689 (66%), Gaps = 5/689 (1%)
Strand=Plus/Plus
Query 475488 GTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTG 475547
|||| | ||||| |||||||| |||||| | || || || || || | | |
Sbjct 4864661 GTCTGCGTACTGCCTGTGAACGGACTAAGCATACACTCTCCTCCAGCACCCAGGCCAGTA 4864720
Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607
|||| |||||||||| | ||| ||||| || | |||| ||||| ||| ||
Sbjct 4864721 TTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCATGCTCGAT 4864780
Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667
||||||| | | |||| || || | || | || || || ||| | | ||
Sbjct 4864781 TTGAAGAATTAAATGCTGACCTGTTCCAAGGCACTCTGGACCCTGTAGAAAAGGCCCTTC 4864840
Query 475668 GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAA 475727
||||| | ||||| ||||| ||||| ||||||| ||||| || || || ||||| || |
Sbjct 4864841 GAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCTACCA 4864900
Query 475728 GAATTCCAAAAA-TAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAA 475786
|||| || || | | ||| | | || | | ||| | ||| ||| | | ||| |
Sbjct 4864901 GAATCCCCAAGACTCAGA-AGCTTCTGCAAGACTTTTTCAGTGGAAAAGAACTGAATAAG 4864959
Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA 475846
|| | || ||||||||||||||||| ||||| || |||||||| || || ||| ||||
Sbjct 4864960 AGCATTAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCCGCCATTCTATCT 4865019
Query 475847 GGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATT 475905
|| | || | ||||| | | || | | || | || || ||||| || || |
Sbjct 4865020 GG-AGACAAGTCTGAGAATGTTCAGGATTTGATGCTCTTGGATGTCACTCCTCTCTCCCT 4865078
Query 475906 AGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCC 475965
||| ||||||| | || | | ||| | || || | | ||||| | ||| |
Sbjct 4865079 TGGTATTGAAACTGCTGCCAGAGTCGTGATTGTCCTCATCAAGTGCAATACCACCATCAC 4865138
Query 475966 ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025
||| | || | || | || | ||||| || || | ||| ||| ||
Sbjct 4865139 TACCAAGCAGACACAGACTTTCACTACCTCCTCTGACAACCAGCCTGGTGTGCTCATTCA 4865198
Query 476026 AATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCT 476085
| | ||||||||||||| | || || ||||| || ||||||| ||||| ||
Sbjct 4865199 GGTGTATGAAGGTGAAAGAGCCATGACCAAGGATAACTACCTTCTTGGAAAGTTTAAACT 4865258
Query 476086 TGAAGGTATTCCTCCTGC-TCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144
| ||| || ||||| || ||| | || |||||||| |||||||| |||||||| ||||
Sbjct 4865259 TACAGGCATACCTCCAGCAACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTG 4865318
Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCT 476173
|||| ||||| || || |||||| |||||
Sbjct 4865319 ATGCCAATGGCATCCTCAATGTTTCTGCT 4865347
Score = 89.7 bits (98), Expect = 3e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797
|||| | ||||| ||||| || || ||||||||||| || || ||||| |||||||| |
Sbjct 4863729 CAGTTACCACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTG 4863788
Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857
||| ||||| || | ||||| | | ||||| ||||| ||||| || | || ||
Sbjct 4863789 GAACTATTGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCTGTTA 4863848
Query 474858 CTTATGGTCTTGATAAGAA 474876
|||||| | ||||||||
Sbjct 4863849 CTTATGAGTTAGATAAGAA 4863867
>seq155
Length=3997344
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | ||||| ||||| || || ||||| ||||| || || ||||| |||||||
Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| |||| ||||| || || ||||| | || ||||| ||||||||||| || || ||
Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||| | ||||||||
Sbjct 782480 TTGCTTATGGGTTAGATAAGAA 782501
Score = 111 bits (122), Expect = 1e-18
Identities = 232/341 (68%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543
|| ||||| | ||||| |||||||| |||||||| | || || || || || |
Sbjct 782805 AGGCGTCTGCGTACTGCCTGTGAACGGGCTAAGCGTACCCTCTCCTCCAGCACCCAGGCC 782864
Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603
| | |||| |||||||||| | ||| ||||| || | |||| ||||| | |||
Sbjct 782865 AGTATTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCGTGCT 782924
Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663
||||||||| | | |||| || || || || | || || || ||| | |
Sbjct 782925 CGATTTGAAGAATTAAATGCTGACCTGTTCCGAGGCACTCTGGACCCTGTAGAAAAGGCC 782984
Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723
|| ||||| | ||||| ||||| ||||| ||||||| ||||| || || || |||||
Sbjct 782985 CTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCT 783044
Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTA 475780
|| ||||| || || || |||| |||| || | | || ||||| ||| | |
Sbjct 783045 ACCAGAATCCCCAAGATTC-AGAA--GCTTCTGCAAGACTTCTTCAATGGAAAAGAACTG 783101
Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821
||| | || | || || |||||||||||||| ||||| ||
Sbjct 783102 AATAAGAGCATTAACCCCGATGAAGCTGTTGCTTATGGTGC 783142
Score = 111 bits (122), Expect = 1e-18
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092
|||||||||||| | || || ||||| ||| ||||||| ||| | ||| |||
Sbjct 783808 GAAGGTGAAAGAGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTTACAGGC 783867
Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152
|| ||||| || ||| | || |||||||| |||||||| |||||||| |||||||| |||
Sbjct 783868 ATACCTCCAGCACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAAT 783927
Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA 476181
|| || || |||||| ||||| |||||
Sbjct 783928 GGCATCCTCAATGTTTCTGCTGTAGATAA 783956
Score = 87.8 bits (96), Expect = 1e-11
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| | || || ||| | || || || ||| ||||| | ||| | || | || ||
Sbjct 781571 TGCAGTCGGCATCGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCACGGGAA 781630
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| || ||||||||||||||||| || || |||| |||||| || ||| |||| ||
Sbjct 781631 GGTGGAGATAATTGCCAATGACCAGGGAAACCGAACCACACCAAGCTACGTTGCTTTCAC 781690
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493
||| || |||| || ||||| ||||| || || |||| | ||||
Sbjct 781691 TGACACAGAACGGCTAATTGGGGATGCCGCGAAGAATCAGGTTGCA 781736
>seq309
Length=1536079
Score = 105 bits (116), Expect = 4e-17
Identities = 158/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| | | ||||||||||| || ||| |||| ||| ||| || |||| | |
Sbjct 714828 ACGAAGTCTCAACACAAGATGAAGGGTGGACTC-CTTTTGAAT-ATTGTATTCAGACAAA 714771
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | |||||| || ||||| ||||| || || || | || ||||||||||||||
Sbjct 714770 GTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATA 714711
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
|||||||| || || ||||| || ||| ||| || || || | | || | ||
Sbjct 714710 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCG 714651
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| || ||||| ||||| |||||||| ||
Sbjct 714650 AGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 714610
Score = 96.9 bits (106), Expect = 2e-14
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| || ||||| |||||||| || || | ||| |||||||||||||| ||||||||
Sbjct 713400 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTT 713341
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || | | ||| || || || | | || | || || || ||
Sbjct 713340 ATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGAT 713281
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || ||||| ||||| |||||||| ||
Sbjct 713280 GGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 713248
>seq423
Length=2413410
Score = 96.9 bits (106), Expect = 2e-14
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| | | ||||||||||| || ||| |||| ||| ||| || |||| | |
Sbjct 7508 ACGAAGTCTCAACACAAGATGAAGGGTGGACTC-CTTTTGAAT-ATTGTATTCAGACAAA 7451
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | | |||||| || ||||| |||| || || | | || |||||||||||||||
Sbjct 7450 GTACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATT 7391
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728
|||||||| | || ||||| || ||| ||| || || || | | || | | |||
Sbjct 7390 CCTTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCA 7331
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || ||||| || || || ||||| ||||| || ||
Sbjct 7330 AGTGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTG 7290
>seq382
Length=2564230
Score = 86.0 bits (94), Expect = 4e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936
||||| |||||||| ||| ||| || | ||| ||||||| || ||||| | |||||
Sbjct 1848032 GTACTGCTTGACGTATGTCCCCTTACACTTGGTATTGAAACTGTGGGAGGTGTCATGACC 1848091
Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996
|| || ||| || || ||| | || ||| || || | | |||||||| |
Sbjct 1848092 AAACTGATTCCAAGGAACACTGTGGTTCCCACCAAGAAGTCTCAGATCTTTTCCACAGCT 1848151
Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGT 476038
||||||||||| |||||||||| ||| || ||| |||||||
Sbjct 1848152 TCTGATAATCAGCCAACTGTAACAATCAAAGTCTATGAAGGT 1848193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266852848281308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |