Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 165 5e-35 seq155 113 3e-19 seq309 105 4e-17 seq423 96.9 2e-14 seq382 86.0 4e-11 >seq23 Length=11062726 Score = 165 bits (182), Expect = 5e-35 Identities = 454/689 (66%), Gaps = 5/689 (1%) Strand=Plus/Plus Query 475488 GTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTG 475547 |||| | ||||| |||||||| |||||| | || || || || || | | | Sbjct 4864661 GTCTGCGTACTGCCTGTGAACGGACTAAGCATACACTCTCCTCCAGCACCCAGGCCAGTA 4864720 Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||||||||| | ||| ||||| || | |||| ||||| ||| || Sbjct 4864721 TTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCATGCTCGAT 4864780 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 ||||||| | | |||| || || | || | || || || ||| | | || Sbjct 4864781 TTGAAGAATTAAATGCTGACCTGTTCCAAGGCACTCTGGACCCTGTAGAAAAGGCCCTTC 4864840 Query 475668 GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAA 475727 ||||| | ||||| ||||| ||||| ||||||| ||||| || || || ||||| || | Sbjct 4864841 GAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCTACCA 4864900 Query 475728 GAATTCCAAAAA-TAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAA 475786 |||| || || | | ||| | | || | | ||| | ||| ||| | | ||| | Sbjct 4864901 GAATCCCCAAGACTCAGA-AGCTTCTGCAAGACTTTTTCAGTGGAAAAGAACTGAATAAG 4864959 Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA 475846 || | || ||||||||||||||||| ||||| || |||||||| || || ||| |||| Sbjct 4864960 AGCATTAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCCGCCATTCTATCT 4865019 Query 475847 GGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATT 475905 || | || | ||||| | | || | | || | || || ||||| || || | Sbjct 4865020 GG-AGACAAGTCTGAGAATGTTCAGGATTTGATGCTCTTGGATGTCACTCCTCTCTCCCT 4865078 Query 475906 AGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCC 475965 ||| ||||||| | || | | ||| | || || | | ||||| | ||| | Sbjct 4865079 TGGTATTGAAACTGCTGCCAGAGTCGTGATTGTCCTCATCAAGTGCAATACCACCATCAC 4865138 Query 475966 ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025 ||| | || | || | || | ||||| || || | ||| ||| || Sbjct 4865139 TACCAAGCAGACACAGACTTTCACTACCTCCTCTGACAACCAGCCTGGTGTGCTCATTCA 4865198 Query 476026 AATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCT 476085 | | ||||||||||||| | || || ||||| || ||||||| ||||| || Sbjct 4865199 GGTGTATGAAGGTGAAAGAGCCATGACCAAGGATAACTACCTTCTTGGAAAGTTTAAACT 4865258 Query 476086 TGAAGGTATTCCTCCTGC-TCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | ||| || ||||| || ||| | || |||||||| |||||||| |||||||| |||| Sbjct 4865259 TACAGGCATACCTCCAGCAACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTG 4865318 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||| ||||| || || |||||| ||||| Sbjct 4865319 ATGCCAATGGCATCCTCAATGTTTCTGCT 4865347 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| | ||||| ||||| || || ||||||||||| || || ||||| |||||||| | Sbjct 4863729 CAGTTACCACTGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATGCTG 4863788 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 ||| ||||| || | ||||| | | ||||| ||||| ||||| || | || || Sbjct 4863789 GAACTATTGCTGGCTTCAATGTGCTTCAAATTATCAATGAGCCAACTGCTGTTGCTGTTA 4863848 Query 474858 CTTATGGTCTTGATAAGAA 474876 |||||| | |||||||| Sbjct 4863849 CTTATGAGTTAGATAAGAA 4863867 >seq155 Length=3997344 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| ||||| || || ||||| ||||| || || ||||| ||||||| Sbjct 782360 ATGCTGTGGTCACTGTGCCAGCCTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 782419 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || || ||||| | || ||||| ||||||||||| || || || Sbjct 782420 CTGGAACTATTGCCGGCCTCAATGTGCTTCGAATTATCAATGAACCAACCGCTGCTGCTA 782479 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | |||||||| Sbjct 782480 TTGCTTATGGGTTAGATAAGAA 782501 Score = 111 bits (122), Expect = 1e-18 Identities = 232/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 || ||||| | ||||| |||||||| |||||||| | || || || || || | Sbjct 782805 AGGCGTCTGCGTACTGCCTGTGAACGGGCTAAGCGTACCCTCTCCTCCAGCACCCAGGCC 782864 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | | |||| |||||||||| | ||| ||||| || | |||| ||||| | ||| Sbjct 782865 AGTATTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCGTGCT 782924 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 ||||||||| | | |||| || || || || | || || || ||| | | Sbjct 782925 CGATTTGAAGAATTAAATGCTGACCTGTTCCGAGGCACTCTGGACCCTGTAGAAAAGGCC 782984 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 || ||||| | ||||| ||||| ||||| ||||||| ||||| || || || ||||| Sbjct 782985 CTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCT 783044 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTA 475780 || ||||| || || || |||| |||| || | | || ||||| ||| | | Sbjct 783045 ACCAGAATCCCCAAGATTC-AGAA--GCTTCTGCAAGACTTCTTCAATGGAAAAGAACTG 783101 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 ||| | || | || || |||||||||||||| ||||| || Sbjct 783102 AATAAGAGCATTAACCCCGATGAAGCTGTTGCTTATGGTGC 783142 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 |||||||||||| | || || ||||| ||| ||||||| ||| | ||| ||| Sbjct 783808 GAAGGTGAAAGAGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTTACAGGC 783867 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||| || ||| | || |||||||| |||||||| |||||||| |||||||| ||| Sbjct 783868 ATACCTCCAGCACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAAT 783927 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA 476181 || || || |||||| ||||| ||||| Sbjct 783928 GGCATCCTCAATGTTTCTGCTGTAGATAA 783956 Score = 87.8 bits (96), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| | || || ||| | || || || ||| ||||| | ||| | || | || || Sbjct 781571 TGCAGTCGGCATCGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCACGGGAA 781630 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||||||||||||||||| || || |||| |||||| || ||| |||| || Sbjct 781631 GGTGGAGATAATTGCCAATGACCAGGGAAACCGAACCACACCAAGCTACGTTGCTTTCAC 781690 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||| || |||| || ||||| ||||| || || |||| | |||| Sbjct 781691 TGACACAGAACGGCTAATTGGGGATGCCGCGAAGAATCAGGTTGCA 781736 >seq309 Length=1536079 Score = 105 bits (116), Expect = 4e-17 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| | | ||||||||||| || ||| |||| ||| ||| || |||| | | Sbjct 714828 ACGAAGTCTCAACACAAGATGAAGGGTGGACTC-CTTTTGAAT-ATTGTATTCAGACAAA 714771 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| || ||||| ||||| || || || | || |||||||||||||| Sbjct 714770 GTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATA 714711 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 |||||||| || || ||||| || ||| ||| || || || | | || | || Sbjct 714710 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCG 714651 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| ||||| |||||||| || Sbjct 714650 AGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 714610 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | ||| |||||||||||||| |||||||| Sbjct 713400 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTT 713341 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || | | ||| || || || | | || | || || || || Sbjct 713340 ATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGAT 713281 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| ||||| |||||||| || Sbjct 713280 GGTTTTCCCCGTGAGGGTCTTCACGAAAATCTG 713248 >seq423 Length=2413410 Score = 96.9 bits (106), Expect = 2e-14 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| | | ||||||||||| || ||| |||| ||| ||| || |||| | | Sbjct 7508 ACGAAGTCTCAACACAAGATGAAGGGTGGACTC-CTTTTGAAT-ATTGTATTCAGACAAA 7451 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| || ||||| |||| || || | | || ||||||||||||||| Sbjct 7450 GTACGGCCATCTTCCAGCTGCTTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATT 7391 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 |||||||| | || ||||| || ||| ||| || || || | | || | | ||| Sbjct 7390 CCTTCCTTAGCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCA 7331 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || ||||| ||||| || || Sbjct 7330 AGTGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAGATCTG 7290 >seq382 Length=2564230 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 ||||| |||||||| ||| ||| || | ||| ||||||| || ||||| | ||||| Sbjct 1848032 GTACTGCTTGACGTATGTCCCCTTACACTTGGTATTGAAACTGTGGGAGGTGTCATGACC 1848091 Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996 || || ||| || || ||| | || ||| || || | | |||||||| | Sbjct 1848092 AAACTGATTCCAAGGAACACTGTGGTTCCCACCAAGAAGTCTCAGATCTTTTCCACAGCT 1848151 Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGT 476038 ||||||||||| |||||||||| ||| || ||| ||||||| Sbjct 1848152 TCTGATAATCAGCCAACTGTAACAATCAAAGTCTATGAAGGT 1848193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266852848281308