Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq966 327 1e-84
seq116 102 9e-17
>seq966
Length=1419223
Score = 327 bits (362), Expect = 1e-84
Identities = 670/988 (68%), Gaps = 17/988 (2%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || |||||| || ||| || || || ||
Sbjct 877530 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCATGTCAAACTTGTTGGC 877471
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
||| || ||||| || | || |||||| || ||| || ||||| || || ||
Sbjct 877470 GAAAAGGTGGTGTTGGT---GAAGCATCCAGCTCAGGTCGCCAACTCCGAAAACACACAC 877414
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| || ||| |||| || ||||| |||| ||||| | |||||||||||
Sbjct 877413 GGAGCGCACGTGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACGTCACCTTC 877354
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || | || | |||||| || ||| || || |
Sbjct 877353 AAAGTACTGCCACTTGACAAACCTAGCGACGGCATTCATGTCAGACAAGTCATACTTATG 877294
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
|| ||| | | ||| || || | || || | ||| | ||||||| |||| ||
Sbjct 877293 GCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTCTGGATACTGGCCCAGAGGTACTC 877234
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG---ATTAACCTGTCCCG 160408
|| |||||||| || |||| | ||| |||||||||| |||| ||| | | | |
Sbjct 877233 ATCTGGGCTGTATGTATCCTGTGCCCACTCCATGAACT-TCCGGATATTTTCATTTTCT- 877176
Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468
|| || | || || || | || || ||||| || ||||| || || | ||
Sbjct 877175 -AGCACATAGCCTACATACTCCCTACTGACTACGAAGTAGGCACTGCCTGAAAAGAGAGG 877117
Query 160469 ---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
| || || ||| |||| ||||| | || ||||| |||| | ||| |||
Sbjct 877116 AGTTTTGAGTGGAGGTGGCG---CTTTGGCTACCCCAGTGTTTGACAGCT-TCCCGTCAA 877061
Query 160526 CAGCG-CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584
|| || ||| || || |||||||| | ||||| | | ||||| || || || |
Sbjct 877060 CAACGGCGTATCTTTTTTTCCACCTTTCTTCCTTGTTCTGAGGCATCTTCTCAGTTTCCA 877001
Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644
| |||| |||| || || || |||| | |||| || |||||||| || || | |
Sbjct 877000 GGTTGTTTTCACCTGAGAATGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAG 876941
Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704
| || || |||| || | || |||| ||||||||| || || |||| || |||||
Sbjct 876940 GGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCATTCTGTACAGGT 876881
Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764
|| |||| || || | || |||||||| || |||||||| || || || || ||||| |
Sbjct 876880 CCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATGCATAAACAACATTCTCCA 876821
Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824
| |||||||||||||| ||| | || || || | || |||||||| || || |
Sbjct 876820 ACTGGCTGGCCACAAAGACATTACCAAAGCAGGATGCAATGCCCACCACTGCGGCTAAAA 876761
Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884
| | || || ||| |||||| || | ||| || | ||||||||| |||||||
Sbjct 876760 AGGATTCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATAGATGG 876701
Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944
|||| || | ||| || | ||| || ||||| ||||| | ||| || || || || || |
Sbjct 876700 CCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATGGAATATGCAATTG 876641
Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004
|||| || ||| || ||| |||| | | | ||| || ||| || |||| |||
Sbjct 876640 GAAAGCCGACCTCTTCTTTACTAAGGGGCTCTACAATGTATTTGCGCATCCTGATGAAAG 876581
Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032
| |||| || || |||||||| |||||
Sbjct 876580 AGGCACAGTCACGGGTCATGTTTATATA 876553
>seq116
Length=6578183
Score = 102 bits (112), Expect = 9e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| | | |||| || |||| |||||| | ||||| || |||| | | |
Sbjct 1486794 AGATACTTTGCCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCT 1486735
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || ||||| |||| || || ||||| | || | ||||| | | |||
Sbjct 1486734 GGAATATAATTCTCATAGTTTTCCCTAGACGGTCCCAGGACAACAGGTACTGAGCCAGCT 1486675
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
|| |||| |||| |||||||| |||||| || |||||||||||||||||||||
Sbjct 1486674 AAAAATGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 1486615
Query 176412 AAATAGAACTTACA 176425
| ||| || || ||
Sbjct 1486614 AGATAAAATTTGCA 1486601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576996097563960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |