Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq966 327 1e-84 seq116 102 9e-17 >seq966 Length=1419223 Score = 327 bits (362), Expect = 1e-84 Identities = 670/988 (68%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || |||||| || ||| || || || || Sbjct 877530 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCATGTCAAACTTGTTGGC 877471 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| || ||||| || | || |||||| || ||| || ||||| || || || Sbjct 877470 GAAAAGGTGGTGTTGGT---GAAGCATCCAGCTCAGGTCGCCAACTCCGAAAACACACAC 877414 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || ||| |||| || ||||| |||| ||||| | ||||||||||| Sbjct 877413 GGAGCGCACGTGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACGTCACCTTC 877354 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | |||||| || ||| || || | Sbjct 877353 AAAGTACTGCCACTTGACAAACCTAGCGACGGCATTCATGTCAGACAAGTCATACTTATG 877294 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 || ||| | | ||| || || | || || | ||| | ||||||| |||| || Sbjct 877293 GCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTCTGGATACTGGCCCAGAGGTACTC 877234 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG---ATTAACCTGTCCCG 160408 || |||||||| || |||| | ||| |||||||||| |||| ||| | | | | Sbjct 877233 ATCTGGGCTGTATGTATCCTGTGCCCACTCCATGAACT-TCCGGATATTTTCATTTTCT- 877176 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || || | || || || | || || ||||| || ||||| || || | || Sbjct 877175 -AGCACATAGCCTACATACTCCCTACTGACTACGAAGTAGGCACTGCCTGAAAAGAGAGG 877117 Query 160469 ---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 | || || ||| |||| ||||| | || ||||| |||| | ||| ||| Sbjct 877116 AGTTTTGAGTGGAGGTGGCG---CTTTGGCTACCCCAGTGTTTGACAGCT-TCCCGTCAA 877061 Query 160526 CAGCG-CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 || || ||| || || |||||||| | ||||| | | ||||| || || || | Sbjct 877060 CAACGGCGTATCTTTTTTTCCACCTTTCTTCCTTGTTCTGAGGCATCTTCTCAGTTTCCA 877001 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| |||| || || || |||| | |||| || |||||||| || || | | Sbjct 877000 GGTTGTTTTCACCTGAGAATGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAG 876941 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || |||| || | || |||| ||||||||| || || |||| || ||||| Sbjct 876940 GGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCACTCATTCTGTACAGGT 876881 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || |||| || || | || |||||||| || |||||||| || || || || ||||| | Sbjct 876880 CCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATGCATAAACAACATTCTCCA 876821 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | |||||||||||||| ||| | || || || | || |||||||| || || | Sbjct 876820 ACTGGCTGGCCACAAAGACATTACCAAAGCAGGATGCAATGCCCACCACTGCGGCTAAAA 876761 Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | | || || ||| |||||| || | ||| || | ||||||||| ||||||| Sbjct 876760 AGGATTCCTCTGCTTTTTTGTCCACATGAATGCAGTAGAAATTCTGAGGCATATAGATGG 876701 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || ||||| ||||| | ||| || || || || || | Sbjct 876700 CCCTCAGGAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATGGAATATGCAATTG 876641 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 |||| || ||| || ||| |||| | | | ||| || ||| || |||| ||| Sbjct 876640 GAAAGCCGACCTCTTCTTTACTAAGGGGCTCTACAATGTATTTGCGCATCCTGATGAAAG 876581 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || || |||||||| ||||| Sbjct 876580 AGGCACAGTCACGGGTCATGTTTATATA 876553 >seq116 Length=6578183 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| | | |||| || |||| |||||| | ||||| || |||| | | | Sbjct 1486794 AGATACTTTGCCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCT 1486735 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| | || | ||||| | | ||| Sbjct 1486734 GGAATATAATTCTCATAGTTTTCCCTAGACGGTCCCAGGACAACAGGTACTGAGCCAGCT 1486675 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| |||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 1486674 AAAAATGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 1486615 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 1486614 AGATAAAATTTGCA 1486601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576996097563960