Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq309 84.2 4e-11
seq38 84.2 4e-11
>seq309
Length=1536079
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || ||||| || | || || ||||||||||| || ||||| ||||| || ||
Sbjct 713390 TGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATC 713331
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||||||||| || || || || | ||||| || || || || ||||| ||
Sbjct 713330 TTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCC 713271
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || |||||
Sbjct 713270 GTGAGGGTCTTCACGAAAATCTGCAT 713245
Score = 84.2 bits (92), Expect = 4e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | || | ||| || |||||| || || || || || | ||| ||
Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 714756
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| || || || || || || | ||||| ||||||||||| || ||||| ||||| ||
Sbjct 714755 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 714696
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || || || || | ||||| || || || || |||||
Sbjct 714695 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 714636
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || |||||
Sbjct 714635 CCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
>seq38
Length=12148825
Score = 84.2 bits (92), Expect = 4e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||| | ||||| || || || | ||| || | || || || || || | | ||
Sbjct 10461042 AATACTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCT 10461101
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| ||||||||||| |||||||| ||||| || || | || |||| |||| |||||
Sbjct 10461102 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTGGGCCTTTACATTTTCTATAGT 10461161
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|| |||| ||||| || || || || ||||| || | || || || ||||| || |
Sbjct 10461162 GTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACAAAAATCTT 10461221
Query 193358 CATTTT 193363
||| ||
Sbjct 10461222 CATCTT 10461227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899306672328720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |