Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq309 84.2 4e-11 seq38 84.2 4e-11 >seq309 Length=1536079 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | || || ||||||||||| || ||||| ||||| || || Sbjct 713390 TGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATC 713331 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||||||||| || || || || | ||||| || || || || ||||| || Sbjct 713330 TTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCC 713271 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| Sbjct 713270 GTGAGGGTCTTCACGAAAATCTGCAT 713245 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || |||||| || || || || || | ||| || Sbjct 714815 ACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCC 714756 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || || || || | ||||| ||||||||||| || ||||| ||||| || Sbjct 714755 AGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGG 714696 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || || || || | ||||| || || || || ||||| Sbjct 714695 ATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 714636 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| Sbjct 714635 CCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 >seq38 Length=12148825 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||| | ||||| || || || | ||| || | || || || || || | | || Sbjct 10461042 AATACTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCT 10461101 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| ||||| || || | || |||| |||| ||||| Sbjct 10461102 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTGGGCCTTTACATTTTCTATAGT 10461161 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || |||| ||||| || || || || ||||| || | || || || ||||| || | Sbjct 10461162 GTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACAAAAATCTT 10461221 Query 193358 CATTTT 193363 ||| || Sbjct 10461222 CATCTT 10461227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899306672328720