Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 7e-15 seq154 91.5 3e-13 seq309 86.0 1e-11 >seq6 Length=12818899 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | ||| | |||||| ||| || || ||| Sbjct 2580505 ATACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2580446 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 2580445 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 2580386 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || || || || ||||| || | || | || Sbjct 2580385 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 2580326 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| || ||||| ||||||||||| ||||| | || ||||||||| Sbjct 2580325 ACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq154 Length=6791889 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT-TAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| | | || ||| | || |||| Sbjct 1707866 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGA-ATACTGTAGTCAG 1707808 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||| ||| | | ||||| |||||||| | Sbjct 1707807 ACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAG 1707748 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||||| ||||| || || || |||||||| ||| | || || | ||| | Sbjct 1707747 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAA 1707688 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || | |||||||| || || | || || | ||||||||||| Sbjct 1707687 CCTCGAGCATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq309 Length=1536079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || ||||| || ||| Sbjct 713468 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTATTCAA 713410 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || |||| |||| || |||||||||||||| | || || |||||||| | Sbjct 713409 A----GTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAG 713354 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| ||||| || || || |||| ||| ||| | || || | ||| | Sbjct 713353 GAATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAA 713294 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || |||||||| || || | || || | || |||||||| Sbjct 713293 CCTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984089973328350