Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 7e-15
seq154 91.5 3e-13
seq309 86.0 1e-11
>seq6
Length=12818899
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || ||||| | || | || | ||| | |||||| ||| || || |||
Sbjct 2580505 ATACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2580446
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || || |||||||| | ||||| || |||||
Sbjct 2580445 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 2580386
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||| || || || || || ||||| || | || | ||
Sbjct 2580385 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 2580326
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| ||||| || ||||| ||||||||||| ||||| | || |||||||||
Sbjct 2580325 ACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq154
Length=6791889
Score = 91.5 bits (100), Expect = 3e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTT-TAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | || | ||| | | || ||| | || ||||
Sbjct 1707866 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGA-ATACTGTAGTCAG 1707808
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || || |||| |||| || |||||||| ||| | | ||||| |||||||| |
Sbjct 1707807 ACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAG 1707748
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||||||| ||||| || || || |||||||| ||| | || || | ||| |
Sbjct 1707747 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAA 1707688
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || | |||||||| || || | || || | |||||||||||
Sbjct 1707687 CCTCGAGCATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq309
Length=1536079
Score = 86.0 bits (94), Expect = 1e-11
Identities = 158/229 (69%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | || | ||| ||| || ||||| || |||
Sbjct 713468 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGA-ATATTGTATTCAA 713410
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || |||| |||| || |||||||||||||| | || || |||||||| |
Sbjct 713409 A----GTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAG 713354
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || ||||| ||||| || || || |||| ||| ||| | || || | ||| |
Sbjct 713353 GAATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAA 713294
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || |||||||| || || | || || | || ||||||||
Sbjct 713293 CCTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984089973328350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |