Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq154 89.7 9e-13 seq309 86.0 1e-11 seq6 84.2 4e-11 >seq154 Length=6791889 Score = 89.7 bits (98), Expect = 9e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | || | ||| | |||| | Sbjct 1707875 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTATTGAATACT 1707816 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || |||||||| || | | ||||| || Sbjct 1707815 GTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTG 1707756 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||| ||||| || || || |||||||| ||| || || || Sbjct 1707755 ATCAGGAGGAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGA 1707696 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || || || | |||||||| || || | || || | |||||||||||| Sbjct 1707695 GGGTTCAACCTCGAGCATGATGGTTTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq309 Length=1536079 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | || | ||| || |||||| || || Sbjct 713468 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC--- 713412 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||| || ||||||||||| || | || || || ||||| || Sbjct 713411 -AAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 713353 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| ||||| || || || |||| ||| ||| || || || | ||| || Sbjct 713352 AATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAAC 713293 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || || | || || | ||| |||||||| Sbjct 713292 CTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq6 Length=12818899 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | || | ||| | |||||| || || || || Sbjct 2580505 ATACCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 2580446 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || ||||| || | ||||| |||||||| Sbjct 2580445 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGG 2580386 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| || || || | || Sbjct 2580385 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 2580326 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| || ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 2580325 ACCTCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904786153621800