Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq309 123 2e-23
seq423 105 6e-18
seq6 104 2e-17
seq70 95.1 1e-14
>seq309
Length=1536079
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || || || ||||| || |||||||| || ||| || |
Sbjct 714606 GATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 714665
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| ||||| |||||||| || || ||||| || ||||| |||||
Sbjct 714666 GGACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCA 714725
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||| || || || |||||||| ||| | | |||| || || ||
Sbjct 714726 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAA 714785
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || || || || | |||||| || | || || ||
Sbjct 714786 TATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 714833
Score = 116 bits (128), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || || || ||||| || |||||||| || ||| || |
Sbjct 713244 GATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 713303
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| |||| |||||||| || || ||||| || ||||| |||||
Sbjct 713304 GGACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCA 713363
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880
||| | |||||||||| || || |||||||| ||| ||| || | || ||
Sbjct 713364 GCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGT---ACTTT---GAATAC 713417
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||||||||| || || || || | |||||| || | || || ||
Sbjct 713418 AATATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 713467
>seq423
Length=2413410
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || || || ||||| || || || || | ||| || |
Sbjct 7286 GATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTC 7345
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| ||||| |||||||| | || |||||||| ||||| |||||
Sbjct 7346 AGACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCA 7405
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||| | || || |||||||| ||| | | |||| || || ||
Sbjct 7406 GCAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAA 7465
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || || || || | |||||| || | || || ||
Sbjct 7466 TATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 7513
>seq6
Length=12818899
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | ||||| |||| ||||| || || || || || || || ||
Sbjct 2580273 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCC 2580332
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||||||| |||||||| || || || || ||
Sbjct 2580333 AGTGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGAC 2580392
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | |||||||||| || || |||||||| ||| | | | |||| || ||
Sbjct 2580393 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 2580452
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| || || || || || || ||| ||||
Sbjct 2580453 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 2580484
>seq70
Length=7483708
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || || || || || | |
Sbjct 5585918 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCTAGT 5585859
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| |||| || || || || ||
Sbjct 5585858 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGACCAG 5585799
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| |||| ||||| || ||||||||||||||| | | |||||||||| |||
Sbjct 5585798 CAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAAAAC 5585739
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || || || || || | ||| ||||| ||||
Sbjct 5585738 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCG 5585704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449723708953880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |