Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq309 123 2e-23 seq423 105 6e-18 seq6 104 2e-17 seq70 95.1 1e-14 >seq309 Length=1536079 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || ||||| || |||||||| || ||| || | Sbjct 714606 GATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 714665 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || ||||| || ||||| ||||| Sbjct 714666 GGACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCA 714725 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||| ||| | | |||| || || || Sbjct 714726 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAA 714785 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 714786 TATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 714833 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || ||||| || |||||||| || ||| || | Sbjct 713244 GATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 713303 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| |||| |||||||| || || ||||| || ||||| ||||| Sbjct 713304 GGACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCA 713363 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 ||| | |||||||||| || || |||||||| ||| ||| || | || || Sbjct 713364 GCAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGT---ACTTT---GAATAC 713417 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || || || | |||||| || | || || || Sbjct 713418 AATATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 713467 >seq423 Length=2413410 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || ||||| || || || || | ||| || | Sbjct 7286 GATGCAGATCTTCGTGAAGACCCTTACAGGGAAAACCATCACACTTGAGATTGAACCCTC 7345 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| | || |||||||| ||||| ||||| Sbjct 7346 AGACACCATAGAAAATGTAAAGGCCAAGATCCAGGCTAAGGAAGGAATTCCTCCTGATCA 7405 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||| | || || |||||||| ||| | | |||| || || || Sbjct 7406 GCAGAGGCGGATCTTCACTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAA 7465 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 7466 TATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGG 7513 >seq6 Length=12818899 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| ||||| || || || || || || || || Sbjct 2580273 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCC 2580332 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| |||||||| || || || || || Sbjct 2580333 AGTGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGAC 2580392 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 2580393 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 2580452 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 2580453 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 2580484 >seq70 Length=7483708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 5585918 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCTAGT 5585859 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||| || || || || || Sbjct 5585858 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGACCAG 5585799 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||| ||||| || ||||||||||||||| | | |||||||||| ||| Sbjct 5585798 CAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAAAAC 5585739 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || | ||| ||||| |||| Sbjct 5585738 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCG 5585704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449723708953880