Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 4e-25
seq70 114 8e-21
seq3 113 3e-20
seq366 107 1e-18
seq31 107 1e-18
seq37 95.1 8e-15
seq309 91.5 1e-13
seq28 86.0 4e-12
>seq6
Length=12818899
Score = 129 bits (142), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || |||||||| | |||||||| | || | ||||| |||||
Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || ||| ||||| || || || | ||| ||| |||||| || | ||| ||||
Sbjct 2580367 TGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGG 2580310
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || || | ||| || || |||||||||||
Sbjct 2580309 TCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276
>seq70
Length=7483708
Score = 114 bits (126), Expect = 8e-21
Identities = 156/216 (72%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||| ||| ||||| ||||| || || || ||| || | |||
Sbjct 5585706 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATC 5585765
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || || || || || ||||| ||||||||| | || | | ||||||||
Sbjct 5585766 CTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTC 5585825
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| || || ||||| || || || | ||| | | |||||| |||| || |||
Sbjct 5585826 TTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| ||||| |||||||| |||||||||||||||
Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 5585919
>seq3
Length=5748141
Score = 113 bits (124), Expect = 3e-20
Identities = 157/217 (72%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 3927310 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATC 3927369
Query 34825 GTCCAGTTGCTTTCCGGCGAAG-ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34883
|||| ||||| | ||| || ||||| | ||||||||| | || | || ||||| |
Sbjct 3927370 ACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTAT 3927429
Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
| | || || ||||| || || || | ||| | | |||||| || | || ||
Sbjct 3927430 CTTGGATCTTGACCTTGAC--ATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGAT 3927487
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| |||| || || |||||||| |||||||||||||||
Sbjct 3927488 GTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 3927524
>seq366
Length=4409749
Score = 107 bits (118), Expect = 1e-18
Identities = 136/185 (74%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||| ||| ||||| ||||| |||||||| ||| || | ||||
Sbjct 1116221 CAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATC 1116280
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||||||||| || ||||| | ||||||||| | || | || ||||| ||
Sbjct 1116281 CTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATC 1116340
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| || || ||||| || || || | ||| ||| |||||| |||| || |||
Sbjct 1116341 TTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1116398
Query 34943 GTCTT 34947
|||||
Sbjct 1116399 GTCTT 1116403
>seq31
Length=11202321
Score = 107 bits (118), Expect = 1e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | |||| ||| ||||| ||||| ||||| ||
Sbjct 8039941 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 8040000
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| ||||| |||| ||||| ||||| ||||| ||||| ||||| ||||||||| | ||
Sbjct 8040001 AGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 8040060
Query 34871 ACCCCCTCCTTGTC 34884
| ||||| || ||
Sbjct 8040061 ATGCCCTCTTTATC 8040074
Score = 93.3 bits (102), Expect = 3e-14
Identities = 123/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| ||||| || || ||||| ||||| |||||||| | ||
Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| || || | || || ||||| || || || | ||| ||| ||| |
Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 8041091
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| || || |||||||| || |||||||||||
Sbjct 8041092 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140
>seq37
Length=11501336
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 7/229 (3%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | |||| | | ||||| |||| |||| ||
Sbjct 11476661 CCACCCCTCAGACAGAGGACCAGGTGCAGGGTGGACCCTTTCTGGATGT---AGTCAGAA 11476717
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || | ||||| |||||||||||||| | |
Sbjct 11476718 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGG 11476777
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||| | || | || || ||||| || || || | ||| | | ||| |
Sbjct 11476778 ATGCCCTCTTCATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTATCACTAGGCTCCA 11476835
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| | || |||||||| || ||||| |||||
Sbjct 11476836 CCTCTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCAT 11476884
>seq309
Length=1536079
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| |||| |||||| ||||| || || || || | | || ||
Sbjct 714821 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCA 714762
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||| ||||| || ||||||||||| | ||||| || | || | || |||||
Sbjct 714761 TCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTA 714702
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||||| || || || || || | || |||
Sbjct 714701 TCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATG 714642
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || |||||||||||||| || || ||||||||
Sbjct 714641 GTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
>seq28
Length=9942386
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/216 (70%), Gaps = 7/216 (3%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || ||||| | |||| ||| ||||| ||||||||||| || ||| ||| ||||
Sbjct 239169 CAGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTGCAGCCATC 239228
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| | ||| || ||||| | ||||| || | | | || ||||||||
Sbjct 239229 -TCCAGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCCTTCCTTGTC 239287
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| | || ||||| || || || | ||| || ||| || | | || |||
Sbjct 239288 TTGGGTCTTGGCCTTGAC--ATTCTTGATGGTGTCACTGAGCTCCACCTGGA--GTGATG 239343
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| |||| | |||||| || ||||||||||||
Sbjct 239344 GTCTTGTCCGTCAAGGTCTTCACCAAGATCTGCATG 239379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325570062770099
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