Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6 129 4e-25 seq70 114 8e-21 seq3 113 3e-20 seq366 107 1e-18 seq31 107 1e-18 seq37 95.1 8e-15 seq309 91.5 1e-13 seq28 86.0 4e-12 >seq6 Length=12818899 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | ||||| ||||| Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 2580367 TGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGG 2580310 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||| || || ||||||||||| Sbjct 2580309 TCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq70 Length=7483708 Score = 114 bits (126), Expect = 8e-21 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| || || || ||| || | ||| Sbjct 5585706 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGATC 5585765 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || || || || ||||| ||||||||| | || | | |||||||| Sbjct 5585766 CTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTC 5585825 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| | | |||||| |||| || ||| Sbjct 5585826 TTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| ||||||||||||||| Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 5585919 >seq3 Length=5748141 Score = 113 bits (124), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| ||||| || ||| |||| |||| Sbjct 3927310 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATC 3927369 Query 34825 GTCCAGTTGCTTTCCGGCGAAG-ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34883 |||| ||||| | ||| || ||||| | ||||||||| | || | || ||||| | Sbjct 3927370 ACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTAT 3927429 Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 | | || || ||||| || || || | ||| | | |||||| || | || || Sbjct 3927430 CTTGGATCTTGACCTTGAC--ATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGAT 3927487 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| || || |||||||| ||||||||||||||| Sbjct 3927488 GTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 3927524 >seq366 Length=4409749 Score = 107 bits (118), Expect = 1e-18 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| |||||||| ||| || | |||| Sbjct 1116221 CAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATC 1116280 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||||||||| || ||||| | ||||||||| | || | || ||||| || Sbjct 1116281 CTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATC 1116340 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| |||||| |||| || ||| Sbjct 1116341 TTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1116398 Query 34943 GTCTT 34947 ||||| Sbjct 1116399 GTCTT 1116403 >seq31 Length=11202321 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 8039941 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 8040000 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| |||| ||||| ||||| ||||| ||||| ||||| ||||||||| | || Sbjct 8040001 AGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 8040060 Query 34871 ACCCCCTCCTTGTC 34884 | ||||| || || Sbjct 8040061 ATGCCCTCTTTATC 8040074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || ||||| ||||| |||||||| | || Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || ||||| || || || | ||| ||| ||| | Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 8041091 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 8041092 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140 >seq37 Length=11501336 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| | | ||||| |||| |||| || Sbjct 11476661 CCACCCCTCAGACAGAGGACCAGGTGCAGGGTGGACCCTTTCTGGATGT---AGTCAGAA 11476717 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || | ||||| |||||||||||||| | | Sbjct 11476718 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGG 11476777 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| | || | || || ||||| || || || | ||| | | ||| | Sbjct 11476778 ATGCCCTCTTCATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTATCACTAGGCTCCA 11476835 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| | || |||||||| || ||||| ||||| Sbjct 11476836 CCTCTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCAT 11476884 >seq309 Length=1536079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| |||| |||||| ||||| || || || || | | || || Sbjct 714821 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCA 714762 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| || ||||||||||| | ||||| || | || | || ||||| Sbjct 714761 TCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTA 714702 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||||| || || || || || | || ||| Sbjct 714701 TCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATG 714642 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||||||||| || || |||||||| Sbjct 714641 GTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 >seq28 Length=9942386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | |||| ||| ||||| ||||||||||| || ||| ||| |||| Sbjct 239169 CAGCACTAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTGCAGCCATC 239228 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| | ||| || ||||| | ||||| || | | | || |||||||| Sbjct 239229 -TCCAGCTGCTTGCTGGCAAATATCAGCCTGTGCTGATCAGGTAGGATGCCTTCCTTGTC 239287 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | | || ||||| || || || | ||| || ||| || | | || ||| Sbjct 239288 TTGGGTCTTGGCCTTGAC--ATTCTTGATGGTGTCACTGAGCTCCACCTGGA--GTGATG 239343 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| |||| | |||||| || |||||||||||| Sbjct 239344 GTCTTGTCCGTCAAGGTCTTCACCAAGATCTGCATG 239379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325570062770099