Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq70 118 8e-22
seq309 104 2e-17
>seq6
Length=12818899
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||| | ||| || |||| || || ||||| ||||| || ||||| || || |
Sbjct 2580502 CCACCCCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2580443
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||| ||| | |||| || ||||| || || ||
Sbjct 2580442 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 2580383
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|||||||||||||| || | ||| |||||| | || | |||||| | || ||
Sbjct 2580382 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 2580323
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || || || || |||||||||||||| || || |||||||||
Sbjct 2580322 TCTAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275
>seq70
Length=7483708
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|||||||||| || | ||||| ||||| || ||||| ||||| | | |||| | |
Sbjct 5585704 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGAGGCGA 5585763
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || |||||||||||| |||||| | ||||| || || || || | || |||
Sbjct 5585764 TCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTG 5585823
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || |||||| | || | |||||| | | || || |||||||| ||
Sbjct 5585824 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATG 5585883
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| || | ||| || ||||| |||||||| ||
Sbjct 5585884 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 5585921
>seq309
Length=1536079
Score = 104 bits (114), Expect = 2e-17
Identities = 152/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || |||||||| || || || || || ||| |||
Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCA--AA--GTACGACCATC 713398
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| || || || |||||| | |||| ||||||||||| || |||||||| || || ||
Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || | | |||||| ||||| || |||| || || || || || ||
Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || | ||| || || || ||||||||
Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385074030264861
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |