Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq23 134 1e-25
seq908 107 1e-17
seq37 104 2e-16
seq155 102 6e-16
seq382 93.3 3e-13
>seq23
Length=11062726
Score = 134 bits (148), Expect = 1e-25
Identities = 425/650 (65%), Gaps = 8/650 (1%)
Strand=Plus/Minus
Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735
|||| ||||| | |||||| || |||||||||||||| | || | | || |||| |
Sbjct 4865095 CAGCAGTTTCAATACCAAGGGAGAGAGGAGTGACATCCAAGAGCATCAAATCCTGAACAT 4865036
Query 281736 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795
| ||| | | ||| ||||| || || || | ||| |||||||| ||||||||||
Sbjct 4865035 TCTCAGACTTGTCTCCAGATAGAATGGCGGCCTGGACAGCTGCACCATAAGCAACAGCTT 4864976
Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855
||||||| |||| | | ||| |||| ||| ||| ||||||| | | ||||| | ||
Sbjct 4864975 CATCAGGGTTAATGCTCTTATTCAGTTCTTTTCCACTGAAAAAGTCTTGCAGAAGCT-TC 4864917
Query 281856 TTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914
| | ||| || || | | || || || || | ||||| ||||| | |||||| ||
Sbjct 4864916 TGAGTCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATGTCATGGATCTGTGACTTG 4864857
Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974
|| ||||| | ||| | | ||||| || || || ||| || |||| |||
Sbjct 4864856 TCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAGAGTGCCTTGGAACAGGTCA 4864797
Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034
| | | |||||| ||| ||| |||| | | || | || ||||| || |
Sbjct 4864796 GCATTTAATTCTTCAAATCGAGCATGGGTAATGGAGGTATAGAAGTCGATTCCCTCATAG 4864737
Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094
| |||||||| ||||| | | || || || || |||| | | |||| ||||||
Sbjct 4864736 AGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGTGTATGCTTAGTCCGTTCA 4864677
Query 282095 CATGCTGTCCTTAGTCTTC-GTAAG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATT 282152
|| || || | || | | | || || || || | ||| | || | || | |
Sbjct 4864676 CAGGCAGTACGCAGACACCTGACAGCTCTCTTCCT--CTCATTGATGTCCTTCTTGTGCT 4864619
Query 282153 TTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211
||| ||| || || ||| | | || | || | || |||||||| ||||| || |||
Sbjct 4864618 TTCGCTTAAACTCAGCAATGAAATGAT-TGACCATTCGGTTATCAAAGTCTTCTCCACCC 4864560
Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271
|| | || | ||| | || | | | |||| |||| |||||| ||| || | |
Sbjct 4864559 AAGTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCCATCCTCAGTAGTGAGGATT 4864500
Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321
| |||||| ||| ||||| |||| |||||| | || |||||| ||||
Sbjct 4864499 GACACATCAAAGGTACCACCTCCCAAGTCAAAAGTCAGCACATTCCTTTC 4864450
>seq908
Length=515378
Score = 107 bits (118), Expect = 1e-17
Identities = 321/493 (65%), Gaps = 2/493 (0%)
Strand=Plus/Minus
Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393
|||||| | ||||| |||| ||||| || || || ||||| || ||||||| |||||
Sbjct 360030 TTTATCCAAGCCATAGGCAATGGCAGCTGCCGTCGGCTCATTGATGATTCTCAGCACATT 359971
Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453
|| || || || ||||||||||| ||||| || | ||| || ||||| ||||| ||
Sbjct 359970 GAGTCCTGCGATGACACCTGCATCTTTGGTGGCCTGGCGTTGAGAGTCGTTGAAATAGGC 359911
Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513
|| || || || || |||| || || | || | | |||| ||| || | ||
Sbjct 359910 CGGCACCGTGATCACAGCATTGGTGACACTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTT 359851
Query 282514 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTTT 282572
||| || | | | ||| || || || | || || | | | |||| | ||| ||
Sbjct 359850 CATCTTGGTCAGCACCATGGAGGAGATCTCCTC-GGGGTAGAAGGCTTTCTTCTCACCTT 359792
Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632
|| || || | | || || || | ||||| |||| |||||||||| |
Sbjct 359791 TGTAGGACACCAGCACCTTGGGCTTGCCCCCTTCGTTAATGACTTGAAATGGCCAAAGCT 359732
Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692
|||| || || || || | || ||||| | || ||||||| ||||| |||||||
Sbjct 359731 TCATGTCCGACTGCACCACCGGATCGTTAAACTTCCTGCCAATTAGACGTTTGGCATCAA 359672
Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752
||| ||| || || || | || | || | ||||| ||||| || || || | |
Sbjct 359671 AAACAGTGTTCTGGGGGTTCATGGCCACCTGGTTCTTGGCCGCATCCCCGATGAGCCGCT 359612
Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812
| || || || || | || || || || ||||| || || || || || || || |
Sbjct 359611 CAGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGA 359552
Query 282813 TTTCAACTTTACC 282825
| || || || ||
Sbjct 359551 TCTCCACCTTGCC 359539
>seq37
Length=11501336
Score = 104 bits (114), Expect = 2e-16
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| ||||| || ||||| ||||| ||||| ||||||||| | || || | |||||
Sbjct 4239870 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 4239811
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
|||||| || ||||| ||| | || ||| ||||| || |||||||||||||| || ||
Sbjct 4239810 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 4239751
Query 131296 TGATGGA 131302
|||||||
Sbjct 4239750 TGATGGA 4239744
>seq155
Length=3997344
Score = 102 bits (112), Expect = 6e-16
Identities = 358/552 (65%), Gaps = 14/552 (3%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| |||||||||||||| || |||| | | ||| |||| ||| ||||||||
Sbjct 783142 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAG 783083
Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|| | | ||||| | ||| | ||| || || | | || || || || | |||||
Sbjct 783082 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAAT 783024
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
||||| | |||||| || || ||||| | ||| | | ||||| || || || ||
Sbjct 783023 GTCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAG 782964
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015
| ||| |||| ||| | | | |||||| ||| ||| | |||| | | ||
Sbjct 782963 AGTGCCTCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 782904
Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075
| || ||||| || | | |||||||| ||||| | | || || || || ||
Sbjct 782903 GAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 782844
Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 282131
| ||| ||||| |||||||| || || | || | | | || ||| | || | |
Sbjct 782843 GGTACGCTTAGCCCGTTCACAGGCAGTACGCAGACGCCTGACAGCTCTCTTGTTCTCACT 782784
Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189
||| || | || | || | ||| || || ||| | ||| | || | ||
Sbjct 782783 GAT----GTCCTTCTTGTGCTTCCGCTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 782730
Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249
|||||||| ||||| || ||||| | || | ||| | || | | | || | ||||
Sbjct 782729 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAAT 782670
Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309
|||||| |||| || | | | |||||| || ||||| |||| |||||||| ||
Sbjct 782669 TCCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 782610
Query 282310 TACATTCATTTC 282321
|||||| ||||
Sbjct 782609 CACATTCCTTTC 782598
Score = 98.7 bits (108), Expect = 7e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| ||||| | ||||| |||| ||||||||| ||||||||||| ||||||| | |||
Sbjct 782501 TTCTTATCTAACCCATAAGCAATAGCAGCAGCGGTTGGTTCATTGATAATTCGAAGCACA 782442
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || || ||||| |||| |||||||| || || |||| || || || || || ||
Sbjct 782441 TTGAGGCCGGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAG 782382
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
|| || ||||| | || ||||
Sbjct 782381 GCTGGCACAGTGACCACAGCAT 782360
>seq382
Length=2564230
Score = 93.3 bits (102), Expect = 3e-13
Identities = 133/186 (72%), Gaps = 6/186 (3%)
Strand=Plus/Minus
Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 281436
||| |||||||| || || || ||||||| || ||| || | || ||||||
Sbjct 1848769 ATTGGTAATAGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCCGTCACACG 1848713
Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496
|||||||||||| |||| | || || ||||||||||| || || ||||| | ||||
Sbjct 1848712 AAGAATACCATTAACATCTATCTCGAAGGTGACTTCAATCTGGGGCACCCCACGGGGAGC 1848653
Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556
||| || || || || || |||||| |||||| || || ||||| |||| |||
Sbjct 1848652 AGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTTTGTGAGGGGTCG 1848593
Query 281557 TTCACC 281562
||||||
Sbjct 1848592 TTCACC 1848587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739112309572146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |