Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23 134 1e-25 seq908 107 1e-17 seq37 104 2e-16 seq155 102 6e-16 seq382 93.3 3e-13 >seq23 Length=11062726 Score = 134 bits (148), Expect = 1e-25 Identities = 425/650 (65%), Gaps = 8/650 (1%) Strand=Plus/Minus Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 |||| ||||| | |||||| || |||||||||||||| | || | | || |||| | Sbjct 4865095 CAGCAGTTTCAATACCAAGGGAGAGAGGAGTGACATCCAAGAGCATCAAATCCTGAACAT 4865036 Query 281736 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 | ||| | | ||| ||||| || || || | ||| |||||||| |||||||||| Sbjct 4865035 TCTCAGACTTGTCTCCAGATAGAATGGCGGCCTGGACAGCTGCACCATAAGCAACAGCTT 4864976 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 ||||||| |||| | | ||| |||| ||| ||| ||||||| | | ||||| | || Sbjct 4864975 CATCAGGGTTAATGCTCTTATTCAGTTCTTTTCCACTGAAAAAGTCTTGCAGAAGCT-TC 4864917 Query 281856 TTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | | ||| || || | | || || || || | ||||| ||||| | |||||| || Sbjct 4864916 TGAGTCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATGTCATGGATCTGTGACTTG 4864857 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 || ||||| | ||| | | ||||| || || || ||| || |||| ||| Sbjct 4864856 TCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAGAGTGCCTTGGAACAGGTCA 4864797 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034 | | | |||||| ||| ||| |||| | | || | || ||||| || | Sbjct 4864796 GCATTTAATTCTTCAAATCGAGCATGGGTAATGGAGGTATAGAAGTCGATTCCCTCATAG 4864737 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | |||||||| ||||| | | || || || || |||| | | |||| |||||| Sbjct 4864736 AGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGTGTATGCTTAGTCCGTTCA 4864677 Query 282095 CATGCTGTCCTTAGTCTTC-GTAAG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATT 282152 || || || | || | | | || || || || | ||| | || | || | | Sbjct 4864676 CAGGCAGTACGCAGACACCTGACAGCTCTCTTCCT--CTCATTGATGTCCTTCTTGTGCT 4864619 Query 282153 TTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 ||| ||| || || ||| | | || | || | || |||||||| ||||| || ||| Sbjct 4864618 TTCGCTTAAACTCAGCAATGAAATGAT-TGACCATTCGGTTATCAAAGTCTTCTCCACCC 4864560 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 || | || | ||| | || | | | |||| |||| |||||| ||| || | | Sbjct 4864559 AAGTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCCATCCTCAGTAGTGAGGATT 4864500 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 | |||||| ||| ||||| |||| |||||| | || |||||| |||| Sbjct 4864499 GACACATCAAAGGTACCACCTCCCAAGTCAAAAGTCAGCACATTCCTTTC 4864450 >seq908 Length=515378 Score = 107 bits (118), Expect = 1e-17 Identities = 321/493 (65%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | ||||| |||| ||||| || || || ||||| || ||||||| ||||| Sbjct 360030 TTTATCCAAGCCATAGGCAATGGCAGCTGCCGTCGGCTCATTGATGATTCTCAGCACATT 359971 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || || || || ||||||||||| ||||| || | ||| || ||||| ||||| || Sbjct 359970 GAGTCCTGCGATGACACCTGCATCTTTGGTGGCCTGGCGTTGAGAGTCGTTGAAATAGGC 359911 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513 || || || || || |||| || || | || | | |||| ||| || | || Sbjct 359910 CGGCACCGTGATCACAGCATTGGTGACACTGTGGCCCAAAAAAGCCTCTGCAGTCTCCTT 359851 Query 282514 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTTT 282572 ||| || | | | ||| || || || | || || | | | |||| | ||| || Sbjct 359850 CATCTTGGTCAGCACCATGGAGGAGATCTCCTC-GGGGTAGAAGGCTTTCTTCTCACCTT 359792 Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632 || || || | | || || || | ||||| |||| |||||||||| | Sbjct 359791 TGTAGGACACCAGCACCTTGGGCTTGCCCCCTTCGTTAATGACTTGAAATGGCCAAAGCT 359732 Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692 |||| || || || || | || ||||| | || ||||||| ||||| ||||||| Sbjct 359731 TCATGTCCGACTGCACCACCGGATCGTTAAACTTCCTGCCAATTAGACGTTTGGCATCAA 359672 Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752 ||| ||| || || || | || | || | ||||| ||||| || || || | | Sbjct 359671 AAACAGTGTTCTGGGGGTTCATGGCCACCTGGTTCTTGGCCGCATCCCCGATGAGCCGCT 359612 Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812 | || || || || | || || || || ||||| || || || || || || || | Sbjct 359611 CAGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGTGCGGTTGCCCTGGTCGTTGGCGATGA 359552 Query 282813 TTTCAACTTTACC 282825 | || || || || Sbjct 359551 TCTCCACCTTGCC 359539 >seq37 Length=11501336 Score = 104 bits (114), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 4239870 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 4239811 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 4239810 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 4239751 Query 131296 TGATGGA 131302 ||||||| Sbjct 4239750 TGATGGA 4239744 >seq155 Length=3997344 Score = 102 bits (112), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||||||||| || |||| | | ||| |||| ||| |||||||| Sbjct 783142 GCACCATAAGCAACAGCTTCATCGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAG 783083 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | ||||| | ||| | ||| || || | | || || || || | ||||| Sbjct 783082 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAAT 783024 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | |||||| || || ||||| | ||| | | ||||| || || || || Sbjct 783023 GTCATGGATCTGTGACTTGTCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAG 782964 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | ||| |||| ||| | | | |||||| ||| ||| | |||| | | || Sbjct 782963 AGTGCCTCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 782904 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || ||||| || | | |||||||| ||||| | | || || || || || Sbjct 782903 GAAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 782844 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 282131 | ||| ||||| |||||||| || || | || | | | || ||| | || | | Sbjct 782843 GGTACGCTTAGCCCGTTCACAGGCAGTACGCAGACGCCTGACAGCTCTCTTGTTCTCACT 782784 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | || | || | ||| || || ||| | ||| | || | || Sbjct 782783 GAT----GTCCTTCTTGTGCTTCCGCTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 782730 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||||| ||||| || ||||| | || | ||| | || | | | || | |||| Sbjct 782729 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAAT 782670 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||||| |||| || | | | |||||| || ||||| |||| |||||||| || Sbjct 782669 TCCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 782610 Query 282310 TACATTCATTTC 282321 |||||| |||| Sbjct 782609 CACATTCCTTTC 782598 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| ||||||||| ||||||||||| ||||||| | ||| Sbjct 782501 TTCTTATCTAACCCATAAGCAATAGCAGCAGCGGTTGGTTCATTGATAATTCGAAGCACA 782442 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| || || |||| || || || || || || Sbjct 782441 TTGAGGCCGGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAG 782382 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 782381 GCTGGCACAGTGACCACAGCAT 782360 >seq382 Length=2564230 Score = 93.3 bits (102), Expect = 3e-13 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 281436 ||| |||||||| || || || ||||||| || ||| || | || |||||| Sbjct 1848769 ATTGGTAATAGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCCGTCACACG 1848713 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 |||||||||||| |||| | || || ||||||||||| || || ||||| | |||| Sbjct 1848712 AAGAATACCATTAACATCTATCTCGAAGGTGACTTCAATCTGGGGCACCCCACGGGGAGC 1848653 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || || || |||||| |||||| || || ||||| |||| ||| Sbjct 1848652 AGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTTTGTGAGGGGTCG 1848593 Query 281557 TTCACC 281562 |||||| Sbjct 1848592 TTCACC 1848587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739112309572146