Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq214 82.4 7e-11 >seq214 Length=5267106 Score = 82.4 bits (90), Expect = 7e-11 Identities = 199/299 (67%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 |||| |||| ||| || ||||| || ||| || ||| ||| | ||||||| || | Sbjct 2268203 ATGCTTTTTATGTCGCGGACCTTGGGGACATTCTGAAGAAACACCTAAGATGGCGAAAAG 2268144 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAG-AACGACGAGAGAGTCCTC 20323 | | || ||||| ||| ||||| || || || || |||||| |||| | | Sbjct 2268143 CCCTTCCCCGAGTCACTCCCTTTTATGCTGTCAAA----AGTAACGACAGCAGAGCCATA 2268088 Query 20324 ---AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAG 20380 || ||||| || ||| || || || ||||||||||| || ||| || || ||| Sbjct 2268087 GTGAACACCCTCGCCGCCATTGGGACGGGTTTTGACTGTGCAAGCAAGACTGAAATACAG 2268028 Query 20381 TTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAG 20440 || |||| || || || | | || ||||| | | ||||||||||||||| || Sbjct 2268027 TTGGTGCAGGGGCTTGGGGTGCCTCCCGAGAGGATTATCTATGCGAATCCTTGTAAACAA 2267968 Query 20441 CCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 || || || | |||||| || | ||| || | ||||||||||||| || || Sbjct 2267967 GTGTCTCAAATCAAGTATGCTGCCAGTAATGGGGTCCAGATGATGACTTTTGACAGCGA 2267909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463366433831280