Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 seq309 123 5e-23 seq31 111 3e-19 seq423 109 1e-18 seq154 109 1e-18 seq38 105 1e-17 seq366 104 5e-17 seq145 84.2 4e-11 >seq3 Length=5748141 Score = 125 bits (138), Expect = 1e-23 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || |||||||| || || || || || || | | || Sbjct 3927308 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA 3927367 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAG-ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || | || || || | ||||| || || || || || ||||| || || |||||||| Sbjct 3927368 TCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTT 3927427 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| | || ||||| || || || ||| |||| || || || | ||| || Sbjct 3927428 ATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGAT 3927487 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||| ||||| ||||| |||||||| Sbjct 3927488 GTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523 >seq309 Length=1536079 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || ||||| | | | | || ||||| || || Sbjct 714809 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCCAGCTGC 714750 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || || || ||||| ||||| || ||||||||||| || ||||| Sbjct 714749 TTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCTTG 714690 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| ||||| || ||||| || || | || || || || || || Sbjct 714689 GCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTG 714630 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 714629 AGGGTCTTCACGAAAATCTGCAT 714607 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || ||| | | | ||| ||||| || || Sbjct 713443 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAAAG----TACGACCATCTTCCAGCTGC 713388 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 713387 TTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCTTG 713328 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| ||||| || ||||| || || | || || || || || || Sbjct 713327 GCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTG 713268 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 713267 AGGGTCTTCACGAAAATCTGCAT 713245 >seq31 Length=11202321 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || ||||||||||| |||| || || || || || || || || Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || || ||||| || || || ||| | || || ||||||| || Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||||||| |||| ||||| || || ||||||||| Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 8041141 >seq423 Length=2413410 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || ||||| || ||||| | | | | || ||||| || || Sbjct 7489 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCCAGCTGC 7430 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||| ||||| | || || ||||| ||||| |||||||||||| | || ||||| Sbjct 7429 TTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCTGGATCTTG 7370 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| | || | || || || || ||||| Sbjct 7369 GCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGTTTTCCCTGTA 7310 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 7309 AGGGTCTTCACGAAGATCTGCAT 7287 >seq154 Length=6791889 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || | || ||| | || ||||| | | | | || ||||| || || Sbjct 1707841 TGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 1707782 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||| | || || || ||||| ||||| ||||||| |||||| || ||||| Sbjct 1707781 TTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATCCTGGATCTTG 1707722 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| ||||| || ||||| || || | | || || || || || Sbjct 1707721 GCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGTTTTCCCCGTG 1707662 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||||||||| Sbjct 1707661 AGGGTCTTCACGAATATCTGCAT 1707639 >seq38 Length=12148825 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || | || ||| | || ||||| | | | | || ||||| || || Sbjct 10461022 TGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGC 10461081 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||| | || || || ||||| ||||| |||||||||||||| || |||| Sbjct 10461082 TTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTGG 10461141 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || |||||| || || | || || || || || | Sbjct 10461142 GCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTCCCCATA 10461201 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||| ||| Sbjct 10461202 AGGGTCTTCACAAAAATCTTCAT 10461224 >seq366 Length=4409749 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| || | |||||||| || || || || || || | || Sbjct 1116219 CGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCA 1116278 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| ||||| || || || || || ||||| || || ||||||||| Sbjct 1116279 TCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTA 1116338 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| ||||| || ||| | || || || || | ||| || Sbjct 1116339 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1116398 Query 82776 GTCTT 82780 ||||| Sbjct 1116399 GTCTT 1116403 >seq145 Length=4974917 Score = 84.2 bits (92), Expect = 4e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || | |||||| || | || ||||| || || || ||||||||||| Sbjct 2387806 TTCTGAATGTTGTGATCAGAAAGGGTGTAGCCATCTTCCAGCTGCTTGCCAGCAAAGATG 2387747 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 || || || || || || | ||| || | ||||| || ||||| || || ||||| ||| Sbjct 2387746 AGCCTCTGCTGGTCAGGGGTTATGCCCTTTTTATCCTGGATCTTGGCCTTCACATTCTCA 2387687 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 | || ||| | || || || || | || || || ||| |||| ||||| ||||| Sbjct 2387686 GTGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTGTTGTGAGTCAGGGTCTTCACAAAG 2387627 Query 82803 ATCTGCATT 82811 || | |||| Sbjct 2387626 ATTTTCATT 2387618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981438224302219