Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 1e-23
seq309 123 5e-23
seq31 111 3e-19
seq423 109 1e-18
seq154 109 1e-18
seq38 105 1e-17
seq366 104 5e-17
seq145 84.2 4e-11
>seq3
Length=5748141
Score = 125 bits (138), Expect = 1e-23
Identities = 158/216 (73%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | |||||| || || |||||||| || || || || || || | | ||
Sbjct 3927308 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA 3927367
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAG-ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| | || || || | ||||| || || || || || ||||| || || ||||||||
Sbjct 3927368 TCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTT 3927427
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|||||| ||||| | || ||||| || || || ||| |||| || || || | ||| ||
Sbjct 3927428 ATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGAT 3927487
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||||||| ||||| ||||| ||||||||
Sbjct 3927488 GTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523
>seq309
Length=1536079
Score = 123 bits (136), Expect = 5e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || ||||| || ||||| | | | | || ||||| || ||
Sbjct 714809 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCCAGCTGC 714750
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| ||||| || || || ||||| ||||| || ||||||||||| || |||||
Sbjct 714749 TTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCTTG 714690
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| ||||| || ||||| || || | || || || || || ||
Sbjct 714689 GCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTG 714630
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 714629 AGGGTCTTCACGAAAATCTGCAT 714607
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || ||||| || ||| | | | ||| ||||| || ||
Sbjct 713443 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAAAG----TACGACCATCTTCCAGCTGC 713388
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||||||||| || ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 713387 TTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCCTGGATCTTG 713328
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| |||| |||||| ||||| || ||||| || || | || || || || || ||
Sbjct 713327 GCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTG 713268
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 713267 AGGGTCTTCACGAAAATCTGCAT 713245
>seq31
Length=11202321
Score = 111 bits (122), Expect = 3e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| || || || ||||||||||| |||| || || || || || || || ||
Sbjct 8040983 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCT 8041042
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| || ||||| || || ||||| || || || ||| | || || ||||||| ||
Sbjct 8041043 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8041102
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| |||||||| |||| ||||| || || |||||||||
Sbjct 8041103 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 8041141
>seq423
Length=2413410
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || || || ||||| || ||||| | | | | || ||||| || ||
Sbjct 7489 TGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATCTTCCAGCTGC 7430
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||| ||||| | || || ||||| ||||| |||||||||||| | || |||||
Sbjct 7429 TTACCAGTGAAGATCCGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAGCCTGGATCTTG 7370
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || ||||| | || | || || || || |||||
Sbjct 7369 GCCTTTACATTTTCTATGGTGTCTGAGGGTTCAATCTCAAGTGTGATGGTTTTCCCTGTA 7310
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||||||
Sbjct 7309 AGGGTCTTCACGAAGATCTGCAT 7287
>seq154
Length=6791889
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || | || ||| | || ||||| | | | | || ||||| || ||
Sbjct 1707841 TGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 1707782
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| ||| | || || || ||||| ||||| ||||||| |||||| || |||||
Sbjct 1707781 TTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATCCTGGATCTTG 1707722
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| ||||| || ||||| || || | | || || || || ||
Sbjct 1707721 GCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGTTTTCCCCGTG 1707662
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| || |||||||||||
Sbjct 1707661 AGGGTCTTCACGAATATCTGCAT 1707639
>seq38
Length=12148825
Score = 105 bits (116), Expect = 1e-17
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| || || || || | || ||| | || ||||| | | | | || ||||| || ||
Sbjct 10461022 TGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGC 10461081
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||||| ||| | || || || ||||| ||||| |||||||||||||| || ||||
Sbjct 10461082 TTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTGG 10461141
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || |||||| || || | || || || || || |
Sbjct 10461142 GCCTTTACATTTTCTATAGTGTCCGAAGGTTCAACCTCGAGCGTGATGGTTTTCCCCATA 10461201
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| ||||| ||||| |||| |||
Sbjct 10461202 AGGGTCTTCACAAAAATCTTCAT 10461224
>seq366
Length=4409749
Score = 104 bits (114), Expect = 5e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | ||||| || | |||||||| || || || || || || | ||
Sbjct 1116219 CGCAGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCA 1116278
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || ||||| ||||| || || || || || ||||| || || |||||||||
Sbjct 1116279 TCCTCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTA 1116338
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| ||||| || || ||||| ||||| || ||| | || || || || | ||| ||
Sbjct 1116339 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1116398
Query 82776 GTCTT 82780
|||||
Sbjct 1116399 GTCTT 1116403
>seq145
Length=4974917
Score = 84.2 bits (92), Expect = 4e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682
||||| || || | |||||| || | || ||||| || || || |||||||||||
Sbjct 2387806 TTCTGAATGTTGTGATCAGAAAGGGTGTAGCCATCTTCCAGCTGCTTGCCAGCAAAGATG 2387747
Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742
|| || || || || || | ||| || | ||||| || ||||| || || ||||| |||
Sbjct 2387746 AGCCTCTGCTGGTCAGGGGTTATGCCCTTTTTATCCTGGATCTTGGCCTTCACATTCTCA 2387687
Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802
| || ||| | || || || || | || || || ||| |||| ||||| |||||
Sbjct 2387686 GTGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTGTTGTGAGTCAGGGTCTTCACAAAG 2387627
Query 82803 ATCTGCATT 82811
|| | ||||
Sbjct 2387626 ATTTTCATT 2387618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981438224302219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |