Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq31 109 7e-19
seq375 107 3e-18
seq387 105 9e-18
seq324 105 9e-18
seq6 105 9e-18
seq2456 104 3e-17
seq1844 104 3e-17
seq746 104 3e-17
seq470 104 3e-17
seq129 104 3e-17
seq71 95.1 2e-14
seq26 89.7 7e-13
seq153 87.8 2e-12
seq758 86.0 8e-12
seq52 86.0 8e-12
seq314 82.4 1e-10
seq48 82.4 1e-10
>seq31
Length=11202321
Score = 109 bits (120), Expect = 7e-19
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|||| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 1386078 CTTACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 1386019
Query 8713 GATTCCCCGACGAGGAGCAG 8732
|||||||||||| |||| ||
Sbjct 1386018 GATTCCCCGACGGGGAGGAG 1385999
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 1386073 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1386014
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 1386013 CCCGACGGGGAGG 1386001
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 1386002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1386061
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 1386062 TACTAACGAGGA 1386073
>seq375
Length=1960377
Score = 107 bits (118), Expect = 3e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 853600 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 853659
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 853660 TCCCCGACGGGGAG 853673
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 853602 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 853661
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 853662 CCCGACGGGGAGG 853674
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 853673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 853614
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 853613 TACTAACGAGGAATT 853599
>seq387
Length=3314187
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 191277 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 191336
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 191337 CCCCGACGGGGAG 191349
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 230806 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 230747
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 230746 CCCGACGGGGAG 230735
Score = 102 bits (112), Expect = 1e-16
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
|||||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 197773 ATTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 197832
Query 8716 TCCCCGACGAGGAG 8729
|||||||| |||||
Sbjct 197833 TCCCCGACAAGGAG 197846
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 191278 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 191337
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 191338 CCCGACGGGGAG 191349
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 230806 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 230747
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 230746 CCCGACGGGGAG 230735
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| |||| |||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 197772 CATTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 197831
Query 11786 TTCCCCGACGAGGAGG 11801
||||||||| ||||||
Sbjct 197832 TTCCCCGACAAGGAGG 197847
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411
||||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||
Sbjct 230734 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 230793
Query 139412 ATACTAACGAGGA 139424
|||||||||||||
Sbjct 230794 ATACTAACGAGGA 230806
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 191349 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 191290
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 191289 TACTAACGAGGA 191278
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
||||| |||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 197846 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 197787
Query 139413 TACTAACGAGGATTTTGGTA 139432
||||||| |||| | ||||
Sbjct 197786 TACTAACAAGGAATGCGGTA 197767
>seq324
Length=2124287
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||| |||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||
Sbjct 1973420 TTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATT 1973479
Query 8717 CCCCGACGAGGAG 8729
||||||| |||||
Sbjct 1973480 CCCCGACAAGGAG 1973492
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||| |||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||
Sbjct 1973421 TCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATTC 1973480
Query 11789 CCCGACGAGGAGG 11801
|||||| ||||||
Sbjct 1973481 CCCGACAAGGAGG 1973493
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
||||| |||||||| |||||||||||||||||||| |||| |||||||| | |||||||
Sbjct 1973492 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 1973433
Query 139413 TACTAACGAGGA 139424
||||||| ||||
Sbjct 1973432 TACTAACAAGGA 1973421
>seq6
Length=12818899
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2563894 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2563953
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 2563954 CCCCGACGGGGAG 2563966
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2560850 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2560909
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2560910 CCCGACGGGGAG 2560921
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2560849 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2560908
Query 11788 CCCCGACGAGGAG 11800
|||||||| ||||
Sbjct 2560909 CCCCGACGGGGAG 2560921
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2563895 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2563954
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 2563955 CCCGACGGGGAG 2563966
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2560921 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2560862
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2560861 TACTAACGAGGA 2560850
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2563966 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2563907
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2563906 TACTAACGAGGA 2563895
>seq2456
Length=20424
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4556 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4497
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 4496 CCCGACGAGGAG 4485
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 20127 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20068
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 20067 CCCGACGAGGAG 20056
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 4556 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4497
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 4496 CCCGACGAGGAG 4485
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 20127 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20068
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 20067 CCCGACGAGGAG 20056
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4485 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4544
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 4545 TACTAACGGGGA 4556
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 20056 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20115
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 20116 TACTAACGGGGA 20127
>seq1844
Length=33621
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 291 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 350
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 351 CCCGACGAGGAG 362
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 9060 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9119
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 9120 CCCGACGAGGAG 9131
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 26123 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26064
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 26063 CCCGACGAGGAG 26052
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 291 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 350
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 351 CCCGACGAGGAG 362
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 9060 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9119
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 9120 CCCGACGAGGAG 9131
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 26123 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 26064
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 26063 CCCGACGAGGAG 26052
Score = 100 bits (110), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||| |||||||||||| || ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 32996 TTCCCCGTTAGTATAGTAGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 32937
Query 8717 CCCCGACGAGGAG 8729
|||||||||||||
Sbjct 32936 CCCCGACGAGGAG 32924
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 362 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 303
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 302 TACTAACGGGGA 291
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 9131 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9072
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 9071 TACTAACGGGGA 9060
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 26052 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26111
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 26112 TACTAACGGGGA 26123
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| |||||||||||| || ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 32995 TCCCCGTTAGTATAGTAGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 32936
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 32935 CCCGACGAGGAG 32924
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | || ||||
Sbjct 32924 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTACTA 32983
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 32984 TACTAACGGGGA 32995
>seq746
Length=847536
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 807550 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 807491
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 807490 CCCGACGGGGAG 807479
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 807550 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 807491
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 807490 CCCGACGGGGAGG 807478
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 807479 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 807538
Query 139413 TACTAACGAGGAT 139425
|||||||||||||
Sbjct 807539 TACTAACGAGGAT 807551
Score = 96.9 bits (106), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 840440 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 840499
Query 8718 CCCGACGA 8725
||||||||
Sbjct 840500 CCCGACGA 840507
Score = 93.3 bits (102), Expect = 6e-14
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 840440 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 840499
Query 11789 CCCGACGA 11796
||||||||
Sbjct 840500 CCCGACGA 840507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 139357 TCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACT 139416
|||||||||| |||||||||||||||||| | |||| |||||||| | |||||||||||
Sbjct 840507 TCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACT 840448
Query 139417 AACGAGGA 139424
|||| |||
Sbjct 840447 AACGGGGA 840440
>seq470
Length=2777046
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2749036 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2748977
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 2748976 CCCGACGAGGAG 2748965
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2770908 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACCCGGGAGACCGGGGTTCGATTC 2770967
Query 8718 CCCGACGAGGAG 8729
||||||||||||
Sbjct 2770968 CCCGACGAGGAG 2770979
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2749036 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2748977
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 2748976 CCCGACGAGGAG 2748965
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2770908 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACCCGGGAGACCGGGGTTCGATTC 2770967
Query 11789 CCCGACGAGGAG 11800
||||||||||||
Sbjct 2770968 CCCGACGAGGAG 2770979
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2748965 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2749024
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 2749025 TACTAACGGGGA 2749036
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2770979 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGGGTGACAGGCGGGGATACTCACCACTA 2770920
Query 139413 TACTAACGAGGA 139424
|||||||| |||
Sbjct 2770919 TACTAACGGGGA 2770908
>seq129
Length=5885081
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 567270 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 567329
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 567330 CCCGACGGGGAG 567341
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 567270 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 567329
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 567330 CCCGACGGGGAG 567341
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 567341 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 567282
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 567281 TACTAACGAGGA 567270
>seq71
Length=5144731
Score = 95.1 bits (104), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721
||||||||||||||| ||||| |||| ||||| | | |||||||||||||||||||||||
Sbjct 1854259 CGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTTCGATTCCCCG 1854200
Query 8722 ACGAGGA 8728
|||||||
Sbjct 1854199 ACGAGGA 1854193
Score = 91.5 bits (100), Expect = 2e-13
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 11734 CGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 11792
||||||||||||||| ||||| |||| ||||| | | |||||||||||||||||||||||
Sbjct 1854259 CGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTTCGATTCCCCG 1854200
Query 11793 ACGAGGA 11799
|||||||
Sbjct 1854199 ACGAGGA 1854193
Score = 86.0 bits (94), Expect = 8e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 139354 TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTAT 139413
||||||||||||| |||||||||||||||| | | |||| |||||||| | ||||||||
Sbjct 1854193 TCCTCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTAT 1854252
Query 139414 ACTAACG 139420
|||||||
Sbjct 1854253 ACTAACG 1854259
>seq26
Length=11862744
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| || | ||||| |||||||||||||||| ||||
Sbjct 9752701 TCCTCGTTAGTATAGTGGTTAGTATCCCTGCCTGTCATGCGGGAGACCGGGGTTCAATTC 9752642
Query 8718 CCCGACGAGGAG 8729
|||||| ||||
Sbjct 9752641 CCCGACAGGGAG 9752630
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| || | ||||| |||||||||||||||| ||||
Sbjct 9752701 TCCTCGTTAGTATAGTGGTTAGTATCCCTGCCTGTCATGCGGGAGACCGGGGTTCAATTC 9752642
Query 11789 CCCGACGAGGAGG 11801
|||||| |||||
Sbjct 9752641 CCCGACAGGGAGG 9752629
>seq153
Length=7306735
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||||| |||||||||||||| ||||| ||| ||||| | |||||||| |||||||||||
Sbjct 3174207 TTCCTTGTTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACTGGGGTTCGATT 3174148
Query 8717 CCCCGACGAGGAG 8729
||| ||| |||||
Sbjct 3174147 CCCTGACAAGGAG 3174135
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||| |||||||||||||| ||||| ||| ||||| | |||||||| ||||||||||||
Sbjct 3174206 TCCTTGTTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACTGGGGTTCGATTC 3174147
Query 11789 CCCGACGAGGAGG 11801
|| ||| ||||||
Sbjct 3174146 CCTGACAAGGAGG 3174134
>seq758
Length=530507
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||| ||||||||||||||| ||||| |||| ||||| | | |||| | ||||||||||||
Sbjct 120715 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCCGGAGTCTGGGGTTCGATTC 120774
Query 8718 CCCGACGAGGAG 8729
||||||||| ||
Sbjct 120775 CCCGACGAGAAG 120786
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||| ||||||||||||||| ||||| |||| ||||| | | |||| | ||||||||||||
Sbjct 120715 TCCCCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCCGGAGTCTGGGGTTCGATTC 120774
Query 11789 CCCGACGAGGAG 11800
||||||||| ||
Sbjct 120775 CCCGACGAGAAG 120786
>seq52
Length=8937789
Score = 86.0 bits (94), Expect = 8e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|||| |||| |||||||||||||| ||||| |||| ||||| | | ||||||| ||||||
Sbjct 2398418 CTTACTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCAGGGTTC 2398477
Query 8713 GATTCCCCGACGAGGAGCAG 8732
||||||||| | |||| ||
Sbjct 2398478 AATTCCCCGATGGGGAGAAG 2398497
>seq314
Length=4067486
Score = 82.4 bits (90), Expect = 1e-10
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 8666 AGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGA 8725
||||||||||| ||||| |||| ||||| | ||||||||||||||| ||||||| ||| |
Sbjct 768939 AGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTTGATTCCCTGACAA 768880
Query 8726 GGAGC 8730
|||||
Sbjct 768879 GGAGC 768875
>seq48
Length=9528703
Score = 82.4 bits (90), Expect = 1e-10
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719
||| ||| ||||||||||||||| || | ||||| || |||||||| ||||||||||||
Sbjct 7086843 CTCATTAATATAGTGGTTAGTATCCCTGCCTGTCACATGGGAGACCCGGGTTCGATTCCT 7086784
Query 8720 CGACGAGGAG 8729
||| ||||||
Sbjct 7086783 CGATGAGGAG 7086774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652592467324240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |